miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33141 5' -54 NC_007497.1 + 34811 0.66 0.754857
Target:  5'- -gGAG-CCCUGAgccuUGAgGUGGACGa -3'
miRNA:   3'- cgUUCgGGGACUau--GCUgCACCUGCg -5'
33141 5' -54 NC_007497.1 + 24410 0.66 0.730451
Target:  5'- cGCAGGaauacgccgagugcCCCCUGcu-UGAUGUGG-CGCu -3'
miRNA:   3'- -CGUUC--------------GGGGACuauGCUGCACCuGCG- -5'
33141 5' -54 NC_007497.1 + 15853 0.66 0.722909
Target:  5'- uGCGAGCcgagcacccacCCCUGAUGCuGAUGcaacgaauugaGGAUGCg -3'
miRNA:   3'- -CGUUCG-----------GGGACUAUG-CUGCa----------CCUGCG- -5'
33141 5' -54 NC_007497.1 + 1398 0.67 0.712057
Target:  5'- cGUGAGCCaauCUccUAUGGCGUGG-CGCa -3'
miRNA:   3'- -CGUUCGGg--GAcuAUGCUGCACCuGCG- -5'
33141 5' -54 NC_007497.1 + 42505 0.67 0.701125
Target:  5'- aGCAGGCCCCgcgcaagaaguUGAUggcACGcCGUGcGAaGCg -3'
miRNA:   3'- -CGUUCGGGG-----------ACUA---UGCuGCAC-CUgCG- -5'
33141 5' -54 NC_007497.1 + 36902 0.67 0.690123
Target:  5'- aGCGGGUUCa-GAauUGCGGCGcGGAUGCg -3'
miRNA:   3'- -CGUUCGGGgaCU--AUGCUGCaCCUGCG- -5'
33141 5' -54 NC_007497.1 + 40722 0.67 0.656818
Target:  5'- cGCGAGCUCaucgcggcGGUACGcgaGCGguucggGGACGCg -3'
miRNA:   3'- -CGUUCGGGga------CUAUGC---UGCa-----CCUGCG- -5'
33141 5' -54 NC_007497.1 + 14075 0.68 0.612129
Target:  5'- aGCgAAGCaUCCUGcucUACGcugaaaccugcuGCGUGGACGCc -3'
miRNA:   3'- -CG-UUCG-GGGACu--AUGC------------UGCACCUGCG- -5'
33141 5' -54 NC_007497.1 + 30962 0.68 0.612129
Target:  5'- uGCGgcGGCCCCUGcgGCGuccCGUGcGGCccauGCg -3'
miRNA:   3'- -CGU--UCGGGGACuaUGCu--GCAC-CUG----CG- -5'
33141 5' -54 NC_007497.1 + 11833 0.69 0.578762
Target:  5'- -gGGGUUgUUGGUACGugGUGGuuGCGCc -3'
miRNA:   3'- cgUUCGGgGACUAUGCugCACC--UGCG- -5'
33141 5' -54 NC_007497.1 + 30023 0.7 0.524166
Target:  5'- aGCAAGCCagaCgGAU-CGACGUcGGuGCGCu -3'
miRNA:   3'- -CGUUCGGg--GaCUAuGCUGCA-CC-UGCG- -5'
33141 5' -54 NC_007497.1 + 31019 0.7 0.492354
Target:  5'- uGC-GGCCCCUGcgGCGACccaUGcGGCGUc -3'
miRNA:   3'- -CGuUCGGGGACuaUGCUGc--AC-CUGCG- -5'
33141 5' -54 NC_007497.1 + 13454 0.7 0.481947
Target:  5'- aCGGGCUCgacGAUGCGAUcUGGACGCu -3'
miRNA:   3'- cGUUCGGGga-CUAUGCUGcACCUGCG- -5'
33141 5' -54 NC_007497.1 + 10323 0.7 0.481947
Target:  5'- gGCGAGCCCaaugcGAUGCGAuCG-GGAUGg -3'
miRNA:   3'- -CGUUCGGGga---CUAUGCU-GCaCCUGCg -5'
33141 5' -54 NC_007497.1 + 6295 0.71 0.431622
Target:  5'- gGCGAGCCCUUGcccgAUGACuggGuGACGCa -3'
miRNA:   3'- -CGUUCGGGGACua--UGCUGca-C-CUGCG- -5'
33141 5' -54 NC_007497.1 + 30882 0.72 0.393653
Target:  5'- uGCGgcGGCCCCUGcgGCGACccaUGcGGCGUc -3'
miRNA:   3'- -CGU--UCGGGGACuaUGCUGc--AC-CUGCG- -5'
33141 5' -54 NC_007497.1 + 21529 0.76 0.219601
Target:  5'- aGCAGcGCCCauggGAUACcggcugcggcagaGGCGUGGGCGCa -3'
miRNA:   3'- -CGUU-CGGGga--CUAUG-------------CUGCACCUGCG- -5'
33141 5' -54 NC_007497.1 + 26257 1.13 0.00057
Target:  5'- cGCAAGCCCCUGAUACGACGUGGACGCc -3'
miRNA:   3'- -CGUUCGGGGACUAUGCUGCACCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.