miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33142 3' -56.3 NC_007497.1 + 18783 0.66 0.615036
Target:  5'- -cGGGCGAcGCCACcauguauGcCGGCGuGUGGu -3'
miRNA:   3'- aaCUCGCUuUGGUGc------CuGCCGC-CACC- -5'
33142 3' -56.3 NC_007497.1 + 8978 0.66 0.58195
Target:  5'- ---cGCGGAGCCgcucgACGcGACGGCGGa-- -3'
miRNA:   3'- aacuCGCUUUGG-----UGC-CUGCCGCCacc -5'
33142 3' -56.3 NC_007497.1 + 34568 0.66 0.570995
Target:  5'- aUGAGCG-AGCCugcGCGGGCGGCc---- -3'
miRNA:   3'- aACUCGCuUUGG---UGCCUGCCGccacc -5'
33142 3' -56.3 NC_007497.1 + 31756 0.67 0.548161
Target:  5'- -cGAGCGugacgguAAAgCGCGG--GGCGGUGGu -3'
miRNA:   3'- aaCUCGC-------UUUgGUGCCugCCGCCACC- -5'
33142 3' -56.3 NC_007497.1 + 9442 0.67 0.527755
Target:  5'- aUGAGUucGAAAaaaCACGGGCGGa-GUGGu -3'
miRNA:   3'- aACUCG--CUUUg--GUGCCUGCCgcCACC- -5'
33142 3' -56.3 NC_007497.1 + 22600 0.67 0.527755
Target:  5'- -cGAGuCGAuuCCGgaGGAgGGaCGGUGGg -3'
miRNA:   3'- aaCUC-GCUuuGGUg-CCUgCC-GCCACC- -5'
33142 3' -56.3 NC_007497.1 + 35737 0.67 0.513956
Target:  5'- -aGGGUGAAACgagagacuggggugCGCGGGCuGCGGUGc -3'
miRNA:   3'- aaCUCGCUUUG--------------GUGCCUGcCGCCACc -5'
33142 3' -56.3 NC_007497.1 + 7098 0.68 0.506587
Target:  5'- cUUG-GCGGAGCgACGGGCGGCa---- -3'
miRNA:   3'- -AACuCGCUUUGgUGCCUGCCGccacc -5'
33142 3' -56.3 NC_007497.1 + 10195 0.68 0.475545
Target:  5'- -gGAGCGu-GCCGCGGucgcgcaaACGGCGGc-- -3'
miRNA:   3'- aaCUCGCuuUGGUGCC--------UGCCGCCacc -5'
33142 3' -56.3 NC_007497.1 + 20399 0.68 0.465409
Target:  5'- -cGuGgGGAACCAUGauucauggcGAUGGUGGUGGg -3'
miRNA:   3'- aaCuCgCUUUGGUGC---------CUGCCGCCACC- -5'
33142 3' -56.3 NC_007497.1 + 27571 0.69 0.435696
Target:  5'- -cGAGCGucuGCCugcGCGGGCGGCuGcGGg -3'
miRNA:   3'- aaCUCGCuu-UGG---UGCCUGCCGcCaCC- -5'
33142 3' -56.3 NC_007497.1 + 36877 0.69 0.416508
Target:  5'- gUUGGGUuguaGAGGCC-CGGuuGGCGGUGa -3'
miRNA:   3'- -AACUCG----CUUUGGuGCCugCCGCCACc -5'
33142 3' -56.3 NC_007497.1 + 16232 0.78 0.119236
Target:  5'- -aGGGUgGAGGCgGCGGcgGCGGCGGUGGa -3'
miRNA:   3'- aaCUCG-CUUUGgUGCC--UGCCGCCACC- -5'
33142 3' -56.3 NC_007497.1 + 26431 1.08 0.000715
Target:  5'- cUUGAGCGAAACCACGGACGGCGGUGGa -3'
miRNA:   3'- -AACUCGCUUUGGUGCCUGCCGCCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.