miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33143 3' -57 NC_007497.1 + 38213 0.66 0.609338
Target:  5'- uUCaGGAaaUCGGCCUGCAGGUCaGCCa -3'
miRNA:   3'- gGGcCCUagAGUUGGACGUCUGG-CGG- -5'
33143 3' -57 NC_007497.1 + 9369 0.66 0.609338
Target:  5'- gUCGGGcaagcgaugaCUC-GCCUGCAGACCGa- -3'
miRNA:   3'- gGGCCCua--------GAGuUGGACGUCUGGCgg -5'
33143 3' -57 NC_007497.1 + 42106 0.66 0.587584
Target:  5'- aCCGGGAUCUCGcGCCgcacGguGAUgaaGCa -3'
miRNA:   3'- gGGCCCUAGAGU-UGGa---CguCUGg--CGg -5'
33143 3' -57 NC_007497.1 + 851 0.66 0.576758
Target:  5'- aCCGcGGcgUUCuGCUUGCuGACCGUg -3'
miRNA:   3'- gGGC-CCuaGAGuUGGACGuCUGGCGg -5'
33143 3' -57 NC_007497.1 + 16187 0.66 0.576758
Target:  5'- -aCGGcGAcguUCUUcgaAACCgUGUGGGCCGCCg -3'
miRNA:   3'- ggGCC-CU---AGAG---UUGG-ACGUCUGGCGG- -5'
33143 3' -57 NC_007497.1 + 23730 0.66 0.565977
Target:  5'- uUCGGGAUUUCAcCCUuccccuuccgGCGG-CCGCg -3'
miRNA:   3'- gGGCCCUAGAGUuGGA----------CGUCuGGCGg -5'
33143 3' -57 NC_007497.1 + 44302 0.66 0.565977
Target:  5'- gCCGuuGGcgaUCAACCgcgGCGGuGCCGCCg -3'
miRNA:   3'- gGGC--CCuagAGUUGGa--CGUC-UGGCGG- -5'
33143 3' -57 NC_007497.1 + 31209 0.66 0.565977
Target:  5'- aCuuGcGGccccCUUGACCUGCAGuGCCGUCg -3'
miRNA:   3'- -GggC-CCua--GAGUUGGACGUC-UGGCGG- -5'
33143 3' -57 NC_007497.1 + 10343 0.67 0.555248
Target:  5'- aUCGGGAUggCAACUUaGCGGcUCGCCu -3'
miRNA:   3'- gGGCCCUAgaGUUGGA-CGUCuGGCGG- -5'
33143 3' -57 NC_007497.1 + 6565 0.67 0.53398
Target:  5'- cCuuGGGcuggCU-GACCUGCAGGCCGa- -3'
miRNA:   3'- -GggCCCua--GAgUUGGACGUCUGGCgg -5'
33143 3' -57 NC_007497.1 + 14709 0.67 0.502648
Target:  5'- aCCCGGuGAg--CGAuCCUGCguuGGAUCGCUg -3'
miRNA:   3'- -GGGCC-CUagaGUU-GGACG---UCUGGCGG- -5'
33143 3' -57 NC_007497.1 + 43626 0.67 0.502648
Target:  5'- gUCGGGGUCgaugguGCUggGCAGGCCGgCa -3'
miRNA:   3'- gGGCCCUAGagu---UGGa-CGUCUGGCgG- -5'
33143 3' -57 NC_007497.1 + 20868 0.68 0.459219
Target:  5'- aUCGGGAUCaUCAcgGCCUGCaauggcgacacgaaGGACgugcgCGCCg -3'
miRNA:   3'- gGGCCCUAG-AGU--UGGACG--------------UCUG-----GCGG- -5'
33143 3' -57 NC_007497.1 + 34938 0.69 0.432993
Target:  5'- -gCGGGccGUCgCGACCUGUGcGACCGCa -3'
miRNA:   3'- ggGCCC--UAGaGUUGGACGU-CUGGCGg -5'
33143 3' -57 NC_007497.1 + 2193 0.69 0.432039
Target:  5'- aCCGGGcacgCgCAaauagcacggcucGCCacgGCAGGCCGCCa -3'
miRNA:   3'- gGGCCCua--GaGU-------------UGGa--CGUCUGGCGG- -5'
33143 3' -57 NC_007497.1 + 12001 0.7 0.377989
Target:  5'- gCCGGGcgCUCGcUCUGUaucaGGAguCCGCCg -3'
miRNA:   3'- gGGCCCuaGAGUuGGACG----UCU--GGCGG- -5'
33143 3' -57 NC_007497.1 + 35070 0.7 0.377989
Target:  5'- gCCGGcaagCUCGGCCUGCGccgcGAccuCCGCCg -3'
miRNA:   3'- gGGCCcua-GAGUUGGACGU----CU---GGCGG- -5'
33143 3' -57 NC_007497.1 + 43318 0.7 0.347318
Target:  5'- uCUCGGGGgagaUCAccgagacggagcacgGCgUGCAGAUCGCCu -3'
miRNA:   3'- -GGGCCCUag--AGU---------------UGgACGUCUGGCGG- -5'
33143 3' -57 NC_007497.1 + 4597 0.72 0.255656
Target:  5'- -gCGcuGAUCUCGAagcaCUGCAGGCUGCCg -3'
miRNA:   3'- ggGCc-CUAGAGUUg---GACGUCUGGCGG- -5'
33143 3' -57 NC_007497.1 + 37656 0.73 0.224711
Target:  5'- aCCGGGAgggCAGCUUGU-GACCGUCg -3'
miRNA:   3'- gGGCCCUagaGUUGGACGuCUGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.