miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33144 3' -56.9 NC_007497.1 + 43901 0.66 0.605535
Target:  5'- gGCUGACGugGCGaGgauuGCgacGCGCa- -3'
miRNA:   3'- -CGACUGCugCGC-CauguCGa--CGCGcc -5'
33144 3' -56.9 NC_007497.1 + 44516 0.66 0.605535
Target:  5'- cGCUGAa---GUGGUGCucGCgUGUGCGGc -3'
miRNA:   3'- -CGACUgcugCGCCAUGu-CG-ACGCGCC- -5'
33144 3' -56.9 NC_007497.1 + 12829 0.66 0.594637
Target:  5'- --cGGCGAUG-GGUACAcGCaGCGCGc -3'
miRNA:   3'- cgaCUGCUGCgCCAUGU-CGaCGCGCc -5'
33144 3' -56.9 NC_007497.1 + 2047 0.66 0.594637
Target:  5'- aCUGuuGACGUGG-GCAGUuggaaaUGCGCGa -3'
miRNA:   3'- cGACugCUGCGCCaUGUCG------ACGCGCc -5'
33144 3' -56.9 NC_007497.1 + 35150 0.66 0.594637
Target:  5'- aGCcGACGuCGCGGc-CGGC-GCGcCGGg -3'
miRNA:   3'- -CGaCUGCuGCGCCauGUCGaCGC-GCC- -5'
33144 3' -56.9 NC_007497.1 + 16756 0.66 0.593549
Target:  5'- gGCUGGCuGGUGCGcGUGCGGCgcauuacgccgaaUGCGCa- -3'
miRNA:   3'- -CGACUG-CUGCGC-CAUGUCG-------------ACGCGcc -5'
33144 3' -56.9 NC_007497.1 + 14073 0.66 0.583771
Target:  5'- aGCUGACaGCGCGucGUgucGCGGCguaGuCGCGGc -3'
miRNA:   3'- -CGACUGcUGCGC--CA---UGUCGa--C-GCGCC- -5'
33144 3' -56.9 NC_007497.1 + 11375 0.66 0.583771
Target:  5'- cGCUGGCccaucgGACGCGGgcgGGCgGCGCc- -3'
miRNA:   3'- -CGACUG------CUGCGCCaugUCGaCGCGcc -5'
33144 3' -56.9 NC_007497.1 + 29206 0.66 0.572945
Target:  5'- aGCgcaGCacCGUGGUACAGCUGuCGCGc -3'
miRNA:   3'- -CGac-UGcuGCGCCAUGUCGAC-GCGCc -5'
33144 3' -56.9 NC_007497.1 + 41959 0.66 0.572945
Target:  5'- aGCauGC-ACGCGGUGCuGGCgcaugGUGCGGa -3'
miRNA:   3'- -CGacUGcUGCGCCAUG-UCGa----CGCGCC- -5'
33144 3' -56.9 NC_007497.1 + 9152 0.67 0.551444
Target:  5'- aGCauuCG-CGuCGGgcCAGUUGCGCGGg -3'
miRNA:   3'- -CGacuGCuGC-GCCauGUCGACGCGCC- -5'
33144 3' -56.9 NC_007497.1 + 8325 0.67 0.5376
Target:  5'- aCUGGCGcUGCGGcucggcaggacgcuUGCcgAGCUGCGCGc -3'
miRNA:   3'- cGACUGCuGCGCC--------------AUG--UCGACGCGCc -5'
33144 3' -56.9 NC_007497.1 + 1413 0.67 0.518635
Target:  5'- ---uAUGGCGUGGcGCAGCguccgauUGCGCGGc -3'
miRNA:   3'- cgacUGCUGCGCCaUGUCG-------ACGCGCC- -5'
33144 3' -56.9 NC_007497.1 + 43081 0.67 0.509252
Target:  5'- cGCUGgguGCGGC-CGGgAguGCUGCGCa- -3'
miRNA:   3'- -CGAC---UGCUGcGCCaUguCGACGCGcc -5'
33144 3' -56.9 NC_007497.1 + 12155 0.67 0.509252
Target:  5'- cGCgGAUcucGCGCGGUuc-GCUGCGCGa -3'
miRNA:   3'- -CGaCUGc--UGCGCCAuguCGACGCGCc -5'
33144 3' -56.9 NC_007497.1 + 23249 0.67 0.509252
Target:  5'- gGCgGAaGugGCGGgauggcggGCGGCUGCGaCGa -3'
miRNA:   3'- -CGaCUgCugCGCCa-------UGUCGACGC-GCc -5'
33144 3' -56.9 NC_007497.1 + 40672 0.67 0.509252
Target:  5'- gGUUuAUGGCuGCGGUGC-GCgacGCGCGGg -3'
miRNA:   3'- -CGAcUGCUG-CGCCAUGuCGa--CGCGCC- -5'
33144 3' -56.9 NC_007497.1 + 33174 0.68 0.498911
Target:  5'- aGCUGcACGGCGCGaucguaGGCcGCGCGa -3'
miRNA:   3'- -CGAC-UGCUGCGCcaug--UCGaCGCGCc -5'
33144 3' -56.9 NC_007497.1 + 9661 0.68 0.498911
Target:  5'- cGCgGAgCGAuCGCGaUGCGGCUGCgGCGa -3'
miRNA:   3'- -CGaCU-GCU-GCGCcAUGUCGACG-CGCc -5'
33144 3' -56.9 NC_007497.1 + 27755 0.68 0.487646
Target:  5'- cGUUGGCaGAUGCGGcGCGGCcugcuugccagccUGCGCa- -3'
miRNA:   3'- -CGACUG-CUGCGCCaUGUCG-------------ACGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.