miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33145 3' -57 NC_007497.1 + 14667 0.66 0.596543
Target:  5'- aUCGCCGACgcCAUGcuccGCGCGCGAg-GUg -3'
miRNA:   3'- -GGUGGCUGaaGUGC----CGCGCGCUgaCA- -5'
33145 3' -57 NC_007497.1 + 29541 0.66 0.596543
Target:  5'- aCGCCGugcagaaaUUCGCGGCcauacagcgGCGCGACa-- -3'
miRNA:   3'- gGUGGCug------AAGUGCCG---------CGCGCUGaca -5'
33145 3' -57 NC_007497.1 + 15740 0.66 0.59328
Target:  5'- gCUGCCgGGCUUcCGCaaauuucugcucgaGGCGCGCGACa-- -3'
miRNA:   3'- -GGUGG-CUGAA-GUG--------------CCGCGCGCUGaca -5'
33145 3' -57 NC_007497.1 + 44654 0.66 0.564072
Target:  5'- gCCGCCGAUgcugUCGCGGgGCuguagccugccGCGAUg-- -3'
miRNA:   3'- -GGUGGCUGa---AGUGCCgCG-----------CGCUGaca -5'
33145 3' -57 NC_007497.1 + 43847 0.67 0.553347
Target:  5'- uUACCGcg--UACGGCGCGCGAUc-- -3'
miRNA:   3'- gGUGGCugaaGUGCCGCGCGCUGaca -5'
33145 3' -57 NC_007497.1 + 41056 0.67 0.553347
Target:  5'- uUCACCguGACUUCGCGcGCGC-CGAUg-- -3'
miRNA:   3'- -GGUGG--CUGAAGUGC-CGCGcGCUGaca -5'
33145 3' -57 NC_007497.1 + 28493 0.67 0.552277
Target:  5'- uUCACCGAugaugucgagcacCUUCGC-GCGCGCGgucgaauggagGCUGUc -3'
miRNA:   3'- -GGUGGCU-------------GAAGUGcCGCGCGC-----------UGACA- -5'
33145 3' -57 NC_007497.1 + 38159 0.67 0.54694
Target:  5'- gCGCCGGCgacCGUGGCGCGCcugagcgccuuagucGACUGc -3'
miRNA:   3'- gGUGGCUGaa-GUGCCGCGCG---------------CUGACa -5'
33145 3' -57 NC_007497.1 + 36986 0.67 0.540558
Target:  5'- cCCGCCGGCggcgccggaggCGgaacaagcuuCGGCGCGCcGCUGa -3'
miRNA:   3'- -GGUGGCUGaa---------GU----------GCCGCGCGcUGACa -5'
33145 3' -57 NC_007497.1 + 16263 0.67 0.532088
Target:  5'- aCGCCGACggC-CGGCGCGCu----- -3'
miRNA:   3'- gGUGGCUGaaGuGCCGCGCGcugaca -5'
33145 3' -57 NC_007497.1 + 36427 0.67 0.532088
Target:  5'- gUCGCCGACUuuuuUCAUGGCGa--GACUa- -3'
miRNA:   3'- -GGUGGCUGA----AGUGCCGCgcgCUGAca -5'
33145 3' -57 NC_007497.1 + 8698 0.67 0.532088
Target:  5'- gCCGgCGGCUauuucaaCGCGGUGCGUGAUgGUg -3'
miRNA:   3'- -GGUgGCUGAa------GUGCCGCGCGCUGaCA- -5'
33145 3' -57 NC_007497.1 + 14792 0.67 0.521568
Target:  5'- gUCGCCGACUgcuCGGCGgcaaaugacCGCGGCUc- -3'
miRNA:   3'- -GGUGGCUGAaguGCCGC---------GCGCUGAca -5'
33145 3' -57 NC_007497.1 + 33410 0.67 0.521568
Target:  5'- gCGCCGACUUCA-GGCGCccccacucaGUG-CUGa -3'
miRNA:   3'- gGUGGCUGAAGUgCCGCG---------CGCuGACa -5'
33145 3' -57 NC_007497.1 + 3631 0.68 0.490523
Target:  5'- aCGCCGACgaUGCGGCG-GCGAUUu- -3'
miRNA:   3'- gGUGGCUGaaGUGCCGCgCGCUGAca -5'
33145 3' -57 NC_007497.1 + 2551 0.68 0.460364
Target:  5'- gCGCCGGCggcCGCGGCGCauccuuGCGAUUu- -3'
miRNA:   3'- gGUGGCUGaa-GUGCCGCG------CGCUGAca -5'
33145 3' -57 NC_007497.1 + 27589 0.68 0.460364
Target:  5'- gCCGCCGACUggaUCACgcaguugcaGGCGaauCGCGGCUc- -3'
miRNA:   3'- -GGUGGCUGA---AGUG---------CCGC---GCGCUGAca -5'
33145 3' -57 NC_007497.1 + 10781 0.68 0.460364
Target:  5'- gCgGCCGACa--GgGGCGCGCGcacGCUGg -3'
miRNA:   3'- -GgUGGCUGaagUgCCGCGCGC---UGACa -5'
33145 3' -57 NC_007497.1 + 871 0.68 0.450531
Target:  5'- -gACCGugUUCACGuGCGCGUcGCa-- -3'
miRNA:   3'- ggUGGCugAAGUGC-CGCGCGcUGaca -5'
33145 3' -57 NC_007497.1 + 44213 0.68 0.450531
Target:  5'- uCCGCCGuACcccgcgCugGGUGCGC-ACUGUc -3'
miRNA:   3'- -GGUGGC-UGaa----GugCCGCGCGcUGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.