miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33146 3' -52.2 NC_007497.1 + 34849 0.67 0.755578
Target:  5'- -cUGCGCGGccgCGGUcucgcgcGCGAUCAc -3'
miRNA:   3'- gaACGCGCCua-GCCGuuau---CGCUAGU- -5'
33146 3' -52.2 NC_007497.1 + 19410 0.67 0.744772
Target:  5'- --gGUGCuGGA-CGGCAGUAGCGugcgCGu -3'
miRNA:   3'- gaaCGCG-CCUaGCCGUUAUCGCua--GU- -5'
33146 3' -52.2 NC_007497.1 + 31872 0.67 0.744772
Target:  5'- -cUGCGCucaaGGAaUGGCAcu-GCGAUCAa -3'
miRNA:   3'- gaACGCG----CCUaGCCGUuauCGCUAGU- -5'
33146 3' -52.2 NC_007497.1 + 40350 0.67 0.733841
Target:  5'- --gGUGCuGAUCGGCGGgaagAGCGAg-- -3'
miRNA:   3'- gaaCGCGcCUAGCCGUUa---UCGCUagu -5'
33146 3' -52.2 NC_007497.1 + 1434 0.68 0.7228
Target:  5'- aUUGCGCGGccaCGGaaa-GGCGAUCu -3'
miRNA:   3'- gAACGCGCCua-GCCguuaUCGCUAGu -5'
33146 3' -52.2 NC_007497.1 + 27582 0.68 0.711661
Target:  5'- -cUGCGCGGG-CGGCugcggGGCGGc-- -3'
miRNA:   3'- gaACGCGCCUaGCCGuua--UCGCUagu -5'
33146 3' -52.2 NC_007497.1 + 2291 0.68 0.700437
Target:  5'- uCUUGCGCGGGgccugcUCgGGCAAcGGUGAg-- -3'
miRNA:   3'- -GAACGCGCCU------AG-CCGUUaUCGCUagu -5'
33146 3' -52.2 NC_007497.1 + 22233 0.68 0.700437
Target:  5'- --cGC-CGGAgaagaaGGCAAUGGCgGAUCAg -3'
miRNA:   3'- gaaCGcGCCUag----CCGUUAUCG-CUAGU- -5'
33146 3' -52.2 NC_007497.1 + 12191 0.68 0.68914
Target:  5'- --gGCGCcuguguucgguuGGcUCGGCAAU-GCGAUCGg -3'
miRNA:   3'- gaaCGCG------------CCuAGCCGUUAuCGCUAGU- -5'
33146 3' -52.2 NC_007497.1 + 11464 0.68 0.68914
Target:  5'- -cUGCGCGucgaGGCGGUGGCGAcCGa -3'
miRNA:   3'- gaACGCGCcuagCCGUUAUCGCUaGU- -5'
33146 3' -52.2 NC_007497.1 + 44482 0.68 0.677785
Target:  5'- gCUUGCGUGaucUCGGCAuggcugGGUGGUCGc -3'
miRNA:   3'- -GAACGCGCcu-AGCCGUua----UCGCUAGU- -5'
33146 3' -52.2 NC_007497.1 + 27291 0.69 0.654944
Target:  5'- --cGCGCGGG-CGGCGucu-CGAUCAu -3'
miRNA:   3'- gaaCGCGCCUaGCCGUuaucGCUAGU- -5'
33146 3' -52.2 NC_007497.1 + 42981 0.69 0.642336
Target:  5'- --cGCGCGGAUuccgaccgucaagCGGCAAcugcucGCGGUCGu -3'
miRNA:   3'- gaaCGCGCCUA-------------GCCGUUau----CGCUAGU- -5'
33146 3' -52.2 NC_007497.1 + 37896 0.69 0.62054
Target:  5'- aUUGCGCcc-UCGGCcugAGCGAUCGa -3'
miRNA:   3'- gAACGCGccuAGCCGuuaUCGCUAGU- -5'
33146 3' -52.2 NC_007497.1 + 37879 0.7 0.59764
Target:  5'- --gGCGaccgGGAUCGGCAG-GGCGAUUc -3'
miRNA:   3'- gaaCGCg---CCUAGCCGUUaUCGCUAGu -5'
33146 3' -52.2 NC_007497.1 + 2657 0.7 0.59764
Target:  5'- --gGCGCGGAUcguguggagCGGUAAUcGGcCGAUCAg -3'
miRNA:   3'- gaaCGCGCCUA---------GCCGUUA-UC-GCUAGU- -5'
33146 3' -52.2 NC_007497.1 + 19870 0.7 0.574867
Target:  5'- --gGCGauGGUCGGCca-GGCGGUCAa -3'
miRNA:   3'- gaaCGCgcCUAGCCGuuaUCGCUAGU- -5'
33146 3' -52.2 NC_007497.1 + 20258 0.7 0.552298
Target:  5'- --aGUGCGGAUCGGCAaauggaauacgcGgcGCGAUgGg -3'
miRNA:   3'- gaaCGCGCCUAGCCGU------------UauCGCUAgU- -5'
33146 3' -52.2 NC_007497.1 + 4079 0.71 0.541113
Target:  5'- ---aCGUGGAUCGGUgccGAUcaGGCGGUCAa -3'
miRNA:   3'- gaacGCGCCUAGCCG---UUA--UCGCUAGU- -5'
33146 3' -52.2 NC_007497.1 + 30123 0.74 0.367704
Target:  5'- --cGCGCGGAgcaUGGCGucGGCGAUCc -3'
miRNA:   3'- gaaCGCGCCUa--GCCGUuaUCGCUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.