miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33146 5' -59.9 NC_007497.1 + 24515 0.66 0.435202
Target:  5'- gUCGcCCAuCGCGCCGcguauUCCAuuUGCCGAu -3'
miRNA:   3'- uGGCuGGUcGUGCGGC-----AGGU--ACGGCU- -5'
33146 5' -59.9 NC_007497.1 + 7166 0.66 0.435202
Target:  5'- gGCCGACUcGCugGCCGaCCAgaucaUCGAu -3'
miRNA:   3'- -UGGCUGGuCGugCGGCaGGUac---GGCU- -5'
33146 5' -59.9 NC_007497.1 + 41221 0.66 0.433304
Target:  5'- uCCGGCC-GCACGUCGaauugagccgcgCCAaGCCGGu -3'
miRNA:   3'- uGGCUGGuCGUGCGGCa-----------GGUaCGGCU- -5'
33146 5' -59.9 NC_007497.1 + 29692 0.66 0.425762
Target:  5'- gAUCGGCCAuGCucgGCUGcgCCGUGCCGu -3'
miRNA:   3'- -UGGCUGGU-CGug-CGGCa-GGUACGGCu -5'
33146 5' -59.9 NC_007497.1 + 6574 0.66 0.425762
Target:  5'- gGCUGACCuGCAgGCCGauuUCCugaaGCUGGc -3'
miRNA:   3'- -UGGCUGGuCGUgCGGC---AGGua--CGGCU- -5'
33146 5' -59.9 NC_007497.1 + 9728 0.66 0.416444
Target:  5'- gGCCGagcuuGCCGGCAUGCgCG-CgAUGCgCGAa -3'
miRNA:   3'- -UGGC-----UGGUCGUGCG-GCaGgUACG-GCU- -5'
33146 5' -59.9 NC_007497.1 + 3087 0.66 0.398189
Target:  5'- gUCGAUCAGCGCGUCG-CC--GUCGAa -3'
miRNA:   3'- uGGCUGGUCGUGCGGCaGGuaCGGCU- -5'
33146 5' -59.9 NC_007497.1 + 18893 0.67 0.380455
Target:  5'- -gCGACC-GCaACGCUGUCCGcUGCUGu -3'
miRNA:   3'- ugGCUGGuCG-UGCGGCAGGU-ACGGCu -5'
33146 5' -59.9 NC_007497.1 + 8352 0.67 0.380455
Target:  5'- uGCCGAgCuGCGCGCgcagaUGUCgGcUGCCGAg -3'
miRNA:   3'- -UGGCUgGuCGUGCG-----GCAGgU-ACGGCU- -5'
33146 5' -59.9 NC_007497.1 + 41091 0.67 0.371788
Target:  5'- gACCGAgCAGCgcuACGCCGaCCAU-CUGGa -3'
miRNA:   3'- -UGGCUgGUCG---UGCGGCaGGUAcGGCU- -5'
33146 5' -59.9 NC_007497.1 + 34518 0.67 0.363257
Target:  5'- uGCCGGgCAGCcCGCCGaCCA--CCGAc -3'
miRNA:   3'- -UGGCUgGUCGuGCGGCaGGUacGGCU- -5'
33146 5' -59.9 NC_007497.1 + 14959 0.67 0.363257
Target:  5'- aGCCGGCCGGaaaagGCGCCGgagCCgGUGCgGc -3'
miRNA:   3'- -UGGCUGGUCg----UGCGGCa--GG-UACGgCu -5'
33146 5' -59.9 NC_007497.1 + 29820 0.67 0.354863
Target:  5'- uGCCGcACCGGCuccgGCGCCuucuUCCG-GCCGGc -3'
miRNA:   3'- -UGGC-UGGUCG----UGCGGc---AGGUaCGGCU- -5'
33146 5' -59.9 NC_007497.1 + 15092 0.67 0.354863
Target:  5'- -aCGGCaCGGCGCaGCCGagCAUGgCCGAu -3'
miRNA:   3'- ugGCUG-GUCGUG-CGGCagGUAC-GGCU- -5'
33146 5' -59.9 NC_007497.1 + 23617 0.67 0.354863
Target:  5'- uCCGGgCAGCACGCgG-CCGccgGCCGu -3'
miRNA:   3'- uGGCUgGUCGUGCGgCaGGUa--CGGCu -5'
33146 5' -59.9 NC_007497.1 + 28454 0.67 0.354863
Target:  5'- gACCGACU-GCAUGCCGUugaCCA-GCCc- -3'
miRNA:   3'- -UGGCUGGuCGUGCGGCA---GGUaCGGcu -5'
33146 5' -59.9 NC_007497.1 + 34480 0.67 0.346606
Target:  5'- uGCCGcGCCAa-GCGCCa-CCGUGCCGAc -3'
miRNA:   3'- -UGGC-UGGUcgUGCGGcaGGUACGGCU- -5'
33146 5' -59.9 NC_007497.1 + 19495 0.67 0.346606
Target:  5'- uCCGACUuaucGGCACGCuCG-CCGauuuggacucguUGCCGAa -3'
miRNA:   3'- uGGCUGG----UCGUGCG-GCaGGU------------ACGGCU- -5'
33146 5' -59.9 NC_007497.1 + 40491 0.67 0.346606
Target:  5'- uCgGACCGGgCACaaaagccaGCCGcCCGUGCUGAu -3'
miRNA:   3'- uGgCUGGUC-GUG--------CGGCaGGUACGGCU- -5'
33146 5' -59.9 NC_007497.1 + 26159 0.67 0.338487
Target:  5'- gGCUGcCCcuGCACGCCGggaCCGUcgGCCGGa -3'
miRNA:   3'- -UGGCuGGu-CGUGCGGCa--GGUA--CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.