miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33147 3' -58.5 NC_007497.1 + 25468 0.66 0.49796
Target:  5'- cCUGCcgGCCcGCGAUGUaGUugUCGGACu -3'
miRNA:   3'- -GACG--CGGaCGCUGCA-CGugGGCUUGc -5'
33147 3' -58.5 NC_007497.1 + 3566 0.66 0.487759
Target:  5'- -cGCGgCUcaauuCGACGUGCGgCCGGAUGc -3'
miRNA:   3'- gaCGCgGAc----GCUGCACGUgGGCUUGC- -5'
33147 3' -58.5 NC_007497.1 + 31819 0.66 0.477656
Target:  5'- cCUGCgGCCggaGCGGCG-GCGuCCagaaGAACGa -3'
miRNA:   3'- -GACG-CGGa--CGCUGCaCGU-GGg---CUUGC- -5'
33147 3' -58.5 NC_007497.1 + 43910 0.66 0.477656
Target:  5'- -gGCGaggaUUGCGACGcGCACgUGAACa -3'
miRNA:   3'- gaCGCg---GACGCUGCaCGUGgGCUUGc -5'
33147 3' -58.5 NC_007497.1 + 2520 0.66 0.467658
Target:  5'- aUGCGguCCUGCcacuucugcccgGGCGUGCGCgCCG-GCGg -3'
miRNA:   3'- gACGC--GGACG------------CUGCACGUG-GGCuUGC- -5'
33147 3' -58.5 NC_007497.1 + 3372 0.67 0.457769
Target:  5'- ---aGCCgUGCGGCGcacUGCGCgCGGGCGa -3'
miRNA:   3'- gacgCGG-ACGCUGC---ACGUGgGCUUGC- -5'
33147 3' -58.5 NC_007497.1 + 31018 0.67 0.457769
Target:  5'- gUGCGgccCCUGCGGCGacccaugcgGCGuCCCGuGCGg -3'
miRNA:   3'- gACGC---GGACGCUGCa--------CGU-GGGCuUGC- -5'
33147 3' -58.5 NC_007497.1 + 21172 0.67 0.447993
Target:  5'- ---gGCCgGCGgccGCGUGCuGCCCGGACu -3'
miRNA:   3'- gacgCGGaCGC---UGCACG-UGGGCUUGc -5'
33147 3' -58.5 NC_007497.1 + 44346 0.67 0.438333
Target:  5'- gCUGCGUCgcgugucGCGACGaUGaCGCCUGGAUc -3'
miRNA:   3'- -GACGCGGa------CGCUGC-AC-GUGGGCUUGc -5'
33147 3' -58.5 NC_007497.1 + 42116 0.67 0.438333
Target:  5'- -cGCGCCgcacgGUGAUGaaGCACCUGAAgGc -3'
miRNA:   3'- gaCGCGGa----CGCUGCa-CGUGGGCUUgC- -5'
33147 3' -58.5 NC_007497.1 + 43125 0.67 0.428794
Target:  5'- gUGCGCCcaa-GCGUGCGCCCauGCGa -3'
miRNA:   3'- gACGCGGacgcUGCACGUGGGcuUGC- -5'
33147 3' -58.5 NC_007497.1 + 21302 0.67 0.428794
Target:  5'- -cGCGCCUucuggaggGUGACGauggaaccGCGCgCCGGACGg -3'
miRNA:   3'- gaCGCGGA--------CGCUGCa-------CGUG-GGCUUGC- -5'
33147 3' -58.5 NC_007497.1 + 8014 0.67 0.428794
Target:  5'- gCUGCGCgagGCGGCGgGCGucgagCCGGACGa -3'
miRNA:   3'- -GACGCGga-CGCUGCaCGUg----GGCUUGC- -5'
33147 3' -58.5 NC_007497.1 + 34806 0.67 0.419379
Target:  5'- gCUGCGCCaacgccaGCGACGccucgGCacGCUCGAGCu -3'
miRNA:   3'- -GACGCGGa------CGCUGCa----CG--UGGGCUUGc -5'
33147 3' -58.5 NC_007497.1 + 3334 0.67 0.419379
Target:  5'- -cGCGCUguUGCG-CG-GCACgCUGAACGa -3'
miRNA:   3'- gaCGCGG--ACGCuGCaCGUG-GGCUUGC- -5'
33147 3' -58.5 NC_007497.1 + 16765 0.67 0.41009
Target:  5'- gUGCGCgUGCGGCGcauUACgCCGAAUGc -3'
miRNA:   3'- gACGCGgACGCUGCac-GUG-GGCUUGC- -5'
33147 3' -58.5 NC_007497.1 + 35542 0.67 0.41009
Target:  5'- -aGCGCCUucagcucCGACGUGC-CCCGGcccaugccgcgcGCGa -3'
miRNA:   3'- gaCGCGGAc------GCUGCACGuGGGCU------------UGC- -5'
33147 3' -58.5 NC_007497.1 + 4729 0.68 0.40093
Target:  5'- -aGCGCg-GCGACGUGCaggccGCgCUGAACa -3'
miRNA:   3'- gaCGCGgaCGCUGCACG-----UG-GGCUUGc -5'
33147 3' -58.5 NC_007497.1 + 42242 0.68 0.383006
Target:  5'- aUGCGCCgcgGCcgccGGCGcGCacGCCCGGGCa -3'
miRNA:   3'- gACGCGGa--CG----CUGCaCG--UGGGCUUGc -5'
33147 3' -58.5 NC_007497.1 + 15417 0.68 0.365623
Target:  5'- -cGUcgGCC-GCGACGUgGCGCUCGAACc -3'
miRNA:   3'- gaCG--CGGaCGCUGCA-CGUGGGCUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.