miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33147 5' -52.3 NC_007497.1 + 42151 0.65 0.836316
Target:  5'- cGCGcCaucgacuCGCCGUcgagcAGCGCGCg -3'
miRNA:   3'- aCGCaGaauuacuGCGGCA-----UCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 42328 0.66 0.830767
Target:  5'- aUGCG-CgUGAUGGCGC-GUcGCcGCGCg -3'
miRNA:   3'- -ACGCaGaAUUACUGCGgCAuCG-CGCG- -5'
33147 5' -52.3 NC_007497.1 + 23445 0.66 0.821341
Target:  5'- cGCuGUC-UAGcGACagcgagcugaGCCGUccGGCGCGCg -3'
miRNA:   3'- aCG-CAGaAUUaCUG----------CGGCA--UCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 9985 0.66 0.821341
Target:  5'- gGCGUCgcuggcguUGGCGCaGcAGCGaCGCg -3'
miRNA:   3'- aCGCAGaauu----ACUGCGgCaUCGC-GCG- -5'
33147 5' -52.3 NC_007497.1 + 26966 0.66 0.820387
Target:  5'- aGCgGUCgaccaacgUAagcGUGuCGCCGUccaccgacuucacGGCGCGCg -3'
miRNA:   3'- aCG-CAGa-------AU---UACuGCGGCA-------------UCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 6612 0.66 0.801862
Target:  5'- cGCaGUCgacUAA-GGCGCUcaGGCGCGCc -3'
miRNA:   3'- aCG-CAGa--AUUaCUGCGGcaUCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 29548 0.66 0.79183
Target:  5'- gGCGUCcgcggGAUG-CGCCacaGGCGCGg -3'
miRNA:   3'- aCGCAGaa---UUACuGCGGca-UCGCGCg -5'
33147 5' -52.3 NC_007497.1 + 23836 0.66 0.79183
Target:  5'- cGCGUgCUcGAUcaGACGuuGcuccaGGCGCGCg -3'
miRNA:   3'- aCGCA-GAaUUA--CUGCggCa----UCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 8230 0.66 0.79183
Target:  5'- cUGgGcCUUGAUGuCGCUGagaAGCGCGg -3'
miRNA:   3'- -ACgCaGAAUUACuGCGGCa--UCGCGCg -5'
33147 5' -52.3 NC_007497.1 + 14082 0.66 0.79183
Target:  5'- cGCGUCgu-GUcGCGgCGUAGuCGCGg -3'
miRNA:   3'- aCGCAGaauUAcUGCgGCAUC-GCGCg -5'
33147 5' -52.3 NC_007497.1 + 4499 0.66 0.787767
Target:  5'- cGCGUCgucgaaaacGACGCUGUuguaGGUGcCGCa -3'
miRNA:   3'- aCGCAGaauua----CUGCGGCA----UCGC-GCG- -5'
33147 5' -52.3 NC_007497.1 + 15496 0.66 0.787767
Target:  5'- cUGCGUCUgguuucucuGCGCCGcaUAuCGCGCa -3'
miRNA:   3'- -ACGCAGAauuac----UGCGGC--AUcGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 38331 0.67 0.771244
Target:  5'- aUGuCGUacaguUGAuCGCCGUAGCgaauGCGCa -3'
miRNA:   3'- -AC-GCAgaauuACU-GCGGCAUCG----CGCG- -5'
33147 5' -52.3 NC_007497.1 + 28354 0.67 0.761773
Target:  5'- gGCGUagagGAUGAUGCUGcgcucgaccuucgugAGCGCGUu -3'
miRNA:   3'- aCGCAgaa-UUACUGCGGCa--------------UCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 10092 0.67 0.750041
Target:  5'- aGgGUCUcGcgGcCGCCG-AGCGCGa -3'
miRNA:   3'- aCgCAGAaUuaCuGCGGCaUCGCGCg -5'
33147 5' -52.3 NC_007497.1 + 19432 0.67 0.750041
Target:  5'- cGCGUCU--AUGACGgaaaCGgcaugcuGCGCGUg -3'
miRNA:   3'- aCGCAGAauUACUGCg---GCau-----CGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 17515 0.67 0.750041
Target:  5'- cUGCGUUcgGGUGcACGUCGcAG-GCGCa -3'
miRNA:   3'- -ACGCAGaaUUAC-UGCGGCaUCgCGCG- -5'
33147 5' -52.3 NC_007497.1 + 202 0.67 0.739241
Target:  5'- aGcCGUCUgu----CGCCGcGGUGCGCg -3'
miRNA:   3'- aC-GCAGAauuacuGCGGCaUCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 35469 0.67 0.737067
Target:  5'- cGCGUCgguacuaGCGCCGgcauuccgcAGCGCGUc -3'
miRNA:   3'- aCGCAGaauuac-UGCGGCa--------UCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 41314 0.68 0.728325
Target:  5'- gUGCG-CUU--UGugGCCGUgaaGGCGgcCGCg -3'
miRNA:   3'- -ACGCaGAAuuACugCGGCA---UCGC--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.