miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33147 5' -52.3 NC_007497.1 + 27303 1.13 0.000817
Target:  5'- cUGCGUCUUAAUGACGCCGUAGCGCGCg -3'
miRNA:   3'- -ACGCAGAAUUACUGCGGCAUCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 44355 0.82 0.119768
Target:  5'- cGUGUCgcgacGAUGACGCCuggaucGUGGCGCGCu -3'
miRNA:   3'- aCGCAGaa---UUACUGCGG------CAUCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 3142 0.75 0.32241
Target:  5'- cGCG-CUcgGAcGGCGCCGgccAGCGCGCu -3'
miRNA:   3'- aCGCaGAa-UUaCUGCGGCa--UCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 25730 0.75 0.338215
Target:  5'- uUGCGUCUUGAUcugguacGACGCgG-AGaCGCGCc -3'
miRNA:   3'- -ACGCAGAAUUA-------CUGCGgCaUC-GCGCG- -5'
33147 5' -52.3 NC_007497.1 + 9907 0.73 0.440363
Target:  5'- cGCGaaUCgccggGACGCCGUAugcggccgugaucGCGCGCg -3'
miRNA:   3'- aCGC--AGaauuaCUGCGGCAU-------------CGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 23204 0.72 0.451513
Target:  5'- cGCGUCgUAGUcgagcgccaaGACGCCGUcgacgAGCuGCGCc -3'
miRNA:   3'- aCGCAGaAUUA----------CUGCGGCA-----UCG-CGCG- -5'
33147 5' -52.3 NC_007497.1 + 34636 0.71 0.504027
Target:  5'- gGCgGUCgccgcGGUGGCGCCucGUucGGCGCGCu -3'
miRNA:   3'- aCG-CAGaa---UUACUGCGG--CA--UCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 21583 0.71 0.547858
Target:  5'- gGCGUCU---UGGCGCuCGacuacgacGCGCGCa -3'
miRNA:   3'- aCGCAGAauuACUGCG-GCau------CGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 41645 0.7 0.559012
Target:  5'- cGCG-CUggccGGCGCCGUccgAGCGCGa -3'
miRNA:   3'- aCGCaGAauuaCUGCGGCA---UCGCGCg -5'
33147 5' -52.3 NC_007497.1 + 17491 0.7 0.559012
Target:  5'- aUGCG-CUUGAUgaucgaGACGCCGcc-CGCGCg -3'
miRNA:   3'- -ACGCaGAAUUA------CUGCGGCaucGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 38158 0.7 0.57023
Target:  5'- cGCG-Cc----GGCGaCCGUGGCGCGCc -3'
miRNA:   3'- aCGCaGaauuaCUGC-GGCAUCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 34251 0.69 0.615547
Target:  5'- -aCGUCggaacGAUGACGCucugCGaGGCGCGCg -3'
miRNA:   3'- acGCAGaa---UUACUGCG----GCaUCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 15247 0.69 0.626941
Target:  5'- gGCGcaUCccGcgGACGCCGgccgAGCGcCGCg -3'
miRNA:   3'- aCGC--AGaaUuaCUGCGGCa---UCGC-GCG- -5'
33147 5' -52.3 NC_007497.1 + 30554 0.69 0.626941
Target:  5'- gUGCGUCggcugucUGAgGCCGgagAGCGaUGCg -3'
miRNA:   3'- -ACGCAGaauu---ACUgCGGCa--UCGC-GCG- -5'
33147 5' -52.3 NC_007497.1 + 28446 0.69 0.638339
Target:  5'- cGUGUCcgAGguUGGCGUCGagcAGCGCGUa -3'
miRNA:   3'- aCGCAGaaUU--ACUGCGGCa--UCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 29154 0.69 0.638339
Target:  5'- gUGCGUUg----GACGgUGggAGCGCGCu -3'
miRNA:   3'- -ACGCAGaauuaCUGCgGCa-UCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 16659 0.69 0.649731
Target:  5'- aUGCG-CU-----ACGCCGggAGCGCGCc -3'
miRNA:   3'- -ACGCaGAauuacUGCGGCa-UCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 25659 0.69 0.649731
Target:  5'- aGCGUC--AAUGGCGUCGUccaguuguucGGCaCGCa -3'
miRNA:   3'- aCGCAGaaUUACUGCGGCA----------UCGcGCG- -5'
33147 5' -52.3 NC_007497.1 + 21291 0.69 0.661106
Target:  5'- cGCGgcg-GcgGGCGCCGgcGuCGUGCa -3'
miRNA:   3'- aCGCagaaUuaCUGCGGCauC-GCGCG- -5'
33147 5' -52.3 NC_007497.1 + 8753 0.68 0.69501
Target:  5'- uUGCGUCg-AAUG-CGgCG-AGCGUGCa -3'
miRNA:   3'- -ACGCAGaaUUACuGCgGCaUCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.