miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33147 5' -52.3 NC_007497.1 + 27303 1.13 0.000817
Target:  5'- cUGCGUCUUAAUGACGCCGUAGCGCGCg -3'
miRNA:   3'- -ACGCAGAAUUACUGCGGCAUCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 202 0.67 0.739241
Target:  5'- aGcCGUCUgu----CGCCGcGGUGCGCg -3'
miRNA:   3'- aC-GCAGAauuacuGCGGCaUCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 38331 0.67 0.771244
Target:  5'- aUGuCGUacaguUGAuCGCCGUAGCgaauGCGCa -3'
miRNA:   3'- -AC-GCAgaauuACU-GCGGCAUCG----CGCG- -5'
33147 5' -52.3 NC_007497.1 + 15496 0.66 0.787767
Target:  5'- cUGCGUCUgguuucucuGCGCCGcaUAuCGCGCa -3'
miRNA:   3'- -ACGCAGAauuac----UGCGGC--AUcGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 4499 0.66 0.787767
Target:  5'- cGCGUCgucgaaaacGACGCUGUuguaGGUGcCGCa -3'
miRNA:   3'- aCGCAGaauua----CUGCGGCA----UCGC-GCG- -5'
33147 5' -52.3 NC_007497.1 + 8230 0.66 0.79183
Target:  5'- cUGgGcCUUGAUGuCGCUGagaAGCGCGg -3'
miRNA:   3'- -ACgCaGAAUUACuGCGGCa--UCGCGCg -5'
33147 5' -52.3 NC_007497.1 + 23836 0.66 0.79183
Target:  5'- cGCGUgCUcGAUcaGACGuuGcuccaGGCGCGCg -3'
miRNA:   3'- aCGCA-GAaUUA--CUGCggCa----UCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 26966 0.66 0.820387
Target:  5'- aGCgGUCgaccaacgUAagcGUGuCGCCGUccaccgacuucacGGCGCGCg -3'
miRNA:   3'- aCG-CAGa-------AU---UACuGCGGCA-------------UCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 42151 0.65 0.836316
Target:  5'- cGCGcCaucgacuCGCCGUcgagcAGCGCGCg -3'
miRNA:   3'- aCGCaGaauuacuGCGGCA-----UCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 35469 0.67 0.737067
Target:  5'- cGCGUCgguacuaGCGCCGgcauuccgcAGCGCGUc -3'
miRNA:   3'- aCGCAGaauuac-UGCGGCa--------UCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 3687 0.68 0.706197
Target:  5'- cGCGcCUccaGAUGGuCGgCGUAGCGCuGCu -3'
miRNA:   3'- aCGCaGAa--UUACU-GCgGCAUCGCG-CG- -5'
33147 5' -52.3 NC_007497.1 + 16659 0.69 0.649731
Target:  5'- aUGCG-CU-----ACGCCGggAGCGCGCc -3'
miRNA:   3'- -ACGCaGAauuacUGCGGCa-UCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 3142 0.75 0.32241
Target:  5'- cGCG-CUcgGAcGGCGCCGgccAGCGCGCu -3'
miRNA:   3'- aCGCaGAa-UUaCUGCGGCa--UCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 25730 0.75 0.338215
Target:  5'- uUGCGUCUUGAUcugguacGACGCgG-AGaCGCGCc -3'
miRNA:   3'- -ACGCAGAAUUA-------CUGCGgCaUC-GCGCG- -5'
33147 5' -52.3 NC_007497.1 + 34636 0.71 0.504027
Target:  5'- gGCgGUCgccgcGGUGGCGCCucGUucGGCGCGCu -3'
miRNA:   3'- aCG-CAGaa---UUACUGCGG--CA--UCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 21583 0.71 0.547858
Target:  5'- gGCGUCU---UGGCGCuCGacuacgacGCGCGCa -3'
miRNA:   3'- aCGCAGAauuACUGCG-GCau------CGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 17491 0.7 0.559012
Target:  5'- aUGCG-CUUGAUgaucgaGACGCCGcc-CGCGCg -3'
miRNA:   3'- -ACGCaGAAUUA------CUGCGGCaucGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 38158 0.7 0.57023
Target:  5'- cGCG-Cc----GGCGaCCGUGGCGCGCc -3'
miRNA:   3'- aCGCaGaauuaCUGC-GGCAUCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 34251 0.69 0.615547
Target:  5'- -aCGUCggaacGAUGACGCucugCGaGGCGCGCg -3'
miRNA:   3'- acGCAGaa---UUACUGCG----GCaUCGCGCG- -5'
33147 5' -52.3 NC_007497.1 + 15247 0.69 0.626941
Target:  5'- gGCGcaUCccGcgGACGCCGgccgAGCGcCGCg -3'
miRNA:   3'- aCGC--AGaaUuaCUGCGGCa---UCGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.