miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33148 3' -53 NC_007497.1 + 33123 0.66 0.7951
Target:  5'- cGUGCCGGuucCGGGCCGcgCGAggUUGCGa -3'
miRNA:   3'- -UAUGGCCuu-GCUCGGUa-GCU--AGUGCa -5'
33148 3' -53 NC_007497.1 + 36587 0.66 0.784961
Target:  5'- -gGCCuGAGCGaAGUCG-CGAUCGCGc -3'
miRNA:   3'- uaUGGcCUUGC-UCGGUaGCUAGUGCa -5'
33148 3' -53 NC_007497.1 + 7174 0.66 0.764187
Target:  5'- -cGCUGGccGACcAGaUCAUCGAUCGCGUg -3'
miRNA:   3'- uaUGGCC--UUGcUC-GGUAGCUAGUGCA- -5'
33148 3' -53 NC_007497.1 + 6379 0.66 0.764187
Target:  5'- --uCCGGAGCGguacgaAGCUcggCGAUCGCGa -3'
miRNA:   3'- uauGGCCUUGC------UCGGua-GCUAGUGCa -5'
33148 3' -53 NC_007497.1 + 37471 0.66 0.753575
Target:  5'- -cGCCGaAGCGGGCCAuacugguuUCaGUCACGUc -3'
miRNA:   3'- uaUGGCcUUGCUCGGU--------AGcUAGUGCA- -5'
33148 3' -53 NC_007497.1 + 27784 0.67 0.720998
Target:  5'- cAUGCCGGuuugAACGuGCCGUCc--CACGUg -3'
miRNA:   3'- -UAUGGCC----UUGCuCGGUAGcuaGUGCA- -5'
33148 3' -53 NC_007497.1 + 6923 0.68 0.664983
Target:  5'- ---aCGGAgaucgcGCGGGCgAUCGAUCAgGUg -3'
miRNA:   3'- uaugGCCU------UGCUCGgUAGCUAGUgCA- -5'
33148 3' -53 NC_007497.1 + 36925 0.68 0.630881
Target:  5'- aGUGCCGGcugagaAGCGGGUauuugCAUCGGUgGCGUg -3'
miRNA:   3'- -UAUGGCC------UUGCUCG-----GUAGCUAgUGCA- -5'
33148 3' -53 NC_007497.1 + 39839 0.69 0.619501
Target:  5'- -gGCUGGAACGuAGCCgcGUUGGUCuGCGg -3'
miRNA:   3'- uaUGGCCUUGC-UCGG--UAGCUAG-UGCa -5'
33148 3' -53 NC_007497.1 + 19889 0.69 0.596788
Target:  5'- uAUGCaGGGACGGGUCAUCGAgUCAgGc -3'
miRNA:   3'- -UAUGgCCUUGCUCGGUAGCU-AGUgCa -5'
33148 3' -53 NC_007497.1 + 15606 0.71 0.497184
Target:  5'- gGUGCUGGAacaGCGAGCCGagcguuUCGAgCGCGc -3'
miRNA:   3'- -UAUGGCCU---UGCUCGGU------AGCUaGUGCa -5'
33148 3' -53 NC_007497.1 + 10193 0.71 0.48654
Target:  5'- ---aCGGAGCGuGCCG-CGGUCGCGc -3'
miRNA:   3'- uaugGCCUUGCuCGGUaGCUAGUGCa -5'
33148 3' -53 NC_007497.1 + 9914 0.72 0.445112
Target:  5'- -cGCCGGGACGccguaugcGGCCGU-GAUCGCGc -3'
miRNA:   3'- uaUGGCCUUGC--------UCGGUAgCUAGUGCa -5'
33148 3' -53 NC_007497.1 + 27437 1.05 0.002462
Target:  5'- cAUACCGGAACGAGCCAUCGAUCACGUu -3'
miRNA:   3'- -UAUGGCCUUGCUCGGUAGCUAGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.