miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33148 5' -53.2 NC_007497.1 + 11103 0.66 0.786374
Target:  5'- -cGCACGUcggaACAUCGacaAUCUGACGcGCGa -3'
miRNA:   3'- caUGUGCA----UGUGGCc--UAGACUGC-CGU- -5'
33148 5' -53.2 NC_007497.1 + 1077 0.66 0.755213
Target:  5'- ---gACGaGCACUGGGUCUu-CGGCAa -3'
miRNA:   3'- caugUGCaUGUGGCCUAGAcuGCCGU- -5'
33148 5' -53.2 NC_007497.1 + 17990 0.67 0.733753
Target:  5'- -gGCAaGUACGCgGcGAUCgacGACGGCGc -3'
miRNA:   3'- caUGUgCAUGUGgC-CUAGa--CUGCCGU- -5'
33148 5' -53.2 NC_007497.1 + 16986 0.67 0.711862
Target:  5'- -cGCACGUAC-UCGGGcacguggGACGGCAc -3'
miRNA:   3'- caUGUGCAUGuGGCCUaga----CUGCCGU- -5'
33148 5' -53.2 NC_007497.1 + 27819 0.67 0.711861
Target:  5'- --gUACGUGCGCgucucaGGAUCguaguucGACGGCAc -3'
miRNA:   3'- cauGUGCAUGUGg-----CCUAGa------CUGCCGU- -5'
33148 5' -53.2 NC_007497.1 + 40844 0.67 0.700785
Target:  5'- aUGCGgGUcgACGCCGGcacgaagaacGUCggGACGGCAc -3'
miRNA:   3'- cAUGUgCA--UGUGGCC----------UAGa-CUGCCGU- -5'
33148 5' -53.2 NC_007497.1 + 32480 0.68 0.66718
Target:  5'- cGUACGCGUugcCGCCGGc---GGCGGCc -3'
miRNA:   3'- -CAUGUGCAu--GUGGCCuagaCUGCCGu -5'
33148 5' -53.2 NC_007497.1 + 7717 0.68 0.66718
Target:  5'- gGUGCGgcaGUACACCuGGUC-GGCGGCc -3'
miRNA:   3'- -CAUGUg--CAUGUGGcCUAGaCUGCCGu -5'
33148 5' -53.2 NC_007497.1 + 30168 0.68 0.621937
Target:  5'- -gGCACGU--GCCGacGAUCUGGCGuGCGg -3'
miRNA:   3'- caUGUGCAugUGGC--CUAGACUGC-CGU- -5'
33148 5' -53.2 NC_007497.1 + 16664 0.69 0.610623
Target:  5'- cGUACGCGgaagUGCugCGcGGcgccUUUGACGGCAa -3'
miRNA:   3'- -CAUGUGC----AUGugGC-CU----AGACUGCCGU- -5'
33148 5' -53.2 NC_007497.1 + 27368 0.72 0.418388
Target:  5'- uGUACugGUuCGCCGGGUCguuauagcUGACGaGCGc -3'
miRNA:   3'- -CAUGugCAuGUGGCCUAG--------ACUGC-CGU- -5'
33148 5' -53.2 NC_007497.1 + 11869 0.73 0.362725
Target:  5'- -gGCACGUugggcuCGCCGGAauaUCUGGCGGa- -3'
miRNA:   3'- caUGUGCAu-----GUGGCCU---AGACUGCCgu -5'
33148 5' -53.2 NC_007497.1 + 5425 0.74 0.328576
Target:  5'- gGUGC-CGgacAUGCCGGAUgUGGCGGCGa -3'
miRNA:   3'- -CAUGuGCa--UGUGGCCUAgACUGCCGU- -5'
33148 5' -53.2 NC_007497.1 + 42606 0.76 0.247179
Target:  5'- uUGCGCGUGC-CCGGuGUCUGcCGGCu -3'
miRNA:   3'- cAUGUGCAUGuGGCC-UAGACuGCCGu -5'
33148 5' -53.2 NC_007497.1 + 40590 0.79 0.159283
Target:  5'- cGUGCGCaugGCGCCGGAaUUGGCGGCGa -3'
miRNA:   3'- -CAUGUGca-UGUGGCCUaGACUGCCGU- -5'
33148 5' -53.2 NC_007497.1 + 27473 1.08 0.001424
Target:  5'- uGUACACGUACACCGGAUCUGACGGCAu -3'
miRNA:   3'- -CAUGUGCAUGUGGCCUAGACUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.