Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33149 | 5' | -54.5 | NC_007497.1 | + | 36028 | 0.66 | 0.688255 |
Target: 5'- -gUCGCCGUcGUCGGCa--CAGCuuGCc -3' miRNA: 3'- caAGUGGCA-CAGCCGcuaGUCGcuCG- -5' |
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33149 | 5' | -54.5 | NC_007497.1 | + | 6373 | 0.66 | 0.71132 |
Target: 5'- -gUCAuuuCCGgagcgguacgaagcUCGGCGAUC-GCGAGCa -3' miRNA: 3'- caAGU---GGCac------------AGCCGCUAGuCGCUCG- -5' |
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33149 | 5' | -54.5 | NC_007497.1 | + | 14945 | 0.66 | 0.699276 |
Target: 5'- -cUCAUCGUG-CGGacagCGGCGGGUg -3' miRNA: 3'- caAGUGGCACaGCCgcuaGUCGCUCG- -5' |
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33149 | 5' | -54.5 | NC_007497.1 | + | 442 | 0.66 | 0.710228 |
Target: 5'- -gUCAUCGUcgCGacacGCGAcgCAGCGAGCg -3' miRNA: 3'- caAGUGGCAcaGC----CGCUa-GUCGCUCG- -5' |
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33149 | 5' | -54.5 | NC_007497.1 | + | 39265 | 0.66 | 0.710228 |
Target: 5'- cUUCGCCGUGUaCGGauCGcgCAGCacGCg -3' miRNA: 3'- cAAGUGGCACA-GCC--GCuaGUCGcuCG- -5' |
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33149 | 5' | -54.5 | NC_007497.1 | + | 18814 | 0.66 | 0.67718 |
Target: 5'- -gUCGCUGcaGUCGGCGAUUGcCGAGg -3' miRNA: 3'- caAGUGGCa-CAGCCGCUAGUcGCUCg -5' |
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33149 | 5' | -54.5 | NC_007497.1 | + | 19593 | 0.66 | 0.721102 |
Target: 5'- -gUCGCCGccgauaUGUCgGGCGGUgAGCcguucuGGGCa -3' miRNA: 3'- caAGUGGC------ACAG-CCGCUAgUCG------CUCG- -5' |
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33149 | 5' | -54.5 | NC_007497.1 | + | 28619 | 0.67 | 0.654906 |
Target: 5'- -gUCGCCGUcUCGGUgcgugccggGAUCAGCGcaacGCc -3' miRNA: 3'- caAGUGGCAcAGCCG---------CUAGUCGCu---CG- -5' |
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33149 | 5' | -54.5 | NC_007497.1 | + | 21299 | 0.67 | 0.643732 |
Target: 5'- cGggCGCCGgcGUCGuGCaccuGAUCAGCGcGCg -3' miRNA: 3'- -CaaGUGGCa-CAGC-CG----CUAGUCGCuCG- -5' |
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33149 | 5' | -54.5 | NC_007497.1 | + | 3372 | 0.67 | 0.643732 |
Target: 5'- ---aGCCGUG-CGGCGcacugCGcGCGGGCg -3' miRNA: 3'- caagUGGCACaGCCGCua---GU-CGCUCG- -5' |
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33149 | 5' | -54.5 | NC_007497.1 | + | 41054 | 0.67 | 0.643732 |
Target: 5'- cGUUCACCGUGacuUCGcGCGcgCcgauguuGCGaAGCg -3' miRNA: 3'- -CAAGUGGCAC---AGC-CGCuaGu------CGC-UCG- -5' |
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33149 | 5' | -54.5 | NC_007497.1 | + | 17800 | 0.68 | 0.554783 |
Target: 5'- --gCGCCGUgaaGUCGGUGGaCGGCGAcacGCu -3' miRNA: 3'- caaGUGGCA---CAGCCGCUaGUCGCU---CG- -5' |
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33149 | 5' | -54.5 | NC_007497.1 | + | 44296 | 0.68 | 0.554783 |
Target: 5'- -cUUGCCGccGUUGGCGAUCAaccGCG-GCg -3' miRNA: 3'- caAGUGGCa-CAGCCGCUAGU---CGCuCG- -5' |
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33149 | 5' | -54.5 | NC_007497.1 | + | 7205 | 0.68 | 0.610184 |
Target: 5'- -aUCgACCGgcauguucucUGUCGGCGGcgUCAGCGAc- -3' miRNA: 3'- caAG-UGGC----------ACAGCCGCU--AGUCGCUcg -5' |
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33149 | 5' | -54.5 | NC_007497.1 | + | 25445 | 0.68 | 0.554783 |
Target: 5'- ---gGCCGUGUCGGCGcccccgaucuccAUCGGU-AGCc -3' miRNA: 3'- caagUGGCACAGCCGC------------UAGUCGcUCG- -5' |
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33149 | 5' | -54.5 | NC_007497.1 | + | 8408 | 0.68 | 0.599028 |
Target: 5'- --aCGCgGaGUCGcCGAUCAGCGAGg -3' miRNA: 3'- caaGUGgCaCAGCcGCUAGUCGCUCg -5' |
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33149 | 5' | -54.5 | NC_007497.1 | + | 43689 | 0.69 | 0.533008 |
Target: 5'- cUUCACCGUG-CaGUGAUCAucGCGcGCg -3' miRNA: 3'- cAAGUGGCACaGcCGCUAGU--CGCuCG- -5' |
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33149 | 5' | -54.5 | NC_007497.1 | + | 9988 | 0.69 | 0.511547 |
Target: 5'- -gUCGCUGgcGUUGGCGcagCAGCGAcGCg -3' miRNA: 3'- caAGUGGCa-CAGCCGCua-GUCGCU-CG- -5' |
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33149 | 5' | -54.5 | NC_007497.1 | + | 3594 | 0.7 | 0.468748 |
Target: 5'- -aUCACCGUGaaaUCgGGCGuguagaacguguuGUCGGCGAGa -3' miRNA: 3'- caAGUGGCAC---AG-CCGC-------------UAGUCGCUCg -5' |
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33149 | 5' | -54.5 | NC_007497.1 | + | 14181 | 0.7 | 0.494639 |
Target: 5'- -gUCACCGUaucgagcuauuugagGUCGacugcacaGCGAUCGGCG-GCg -3' miRNA: 3'- caAGUGGCA---------------CAGC--------CGCUAGUCGCuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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