miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33150 3' -59.8 NC_007497.1 + 34579 0.66 0.455479
Target:  5'- uGCGCgggCGGCCGCCGuuugcgcGaCCGcGGCa -3'
miRNA:   3'- gCGCGa--GCUGGCGGCcuuu---C-GGU-CCG- -5'
33150 3' -59.8 NC_007497.1 + 41792 0.66 0.455479
Target:  5'- aGCGCUCGGCgagguccauCGCaGGAucGaCgCGGGCg -3'
miRNA:   3'- gCGCGAGCUG---------GCGgCCUuuC-G-GUCCG- -5'
33150 3' -59.8 NC_007497.1 + 44552 0.66 0.455479
Target:  5'- gGCGC-CGGCUGCUGagacuGAucGCC-GGCa -3'
miRNA:   3'- gCGCGaGCUGGCGGC-----CUuuCGGuCCG- -5'
33150 3' -59.8 NC_007497.1 + 33407 0.66 0.455479
Target:  5'- gGCGC-CGcCCGCCcgcguccgaugGGccAGCgCAGGCg -3'
miRNA:   3'- gCGCGaGCuGGCGG-----------CCuuUCG-GUCCG- -5'
33150 3' -59.8 NC_007497.1 + 8363 0.66 0.45354
Target:  5'- gCGCGCagaugUCGGCUGCCGaGuucgcacuguGgCAGGCg -3'
miRNA:   3'- -GCGCG-----AGCUGGCGGC-Cuuu-------CgGUCCG- -5'
33150 3' -59.8 NC_007497.1 + 36761 0.66 0.44583
Target:  5'- uCGCgGUUCGGUgGCUGGGauggGAGCUAGGUc -3'
miRNA:   3'- -GCG-CGAGCUGgCGGCCU----UUCGGUCCG- -5'
33150 3' -59.8 NC_007497.1 + 33102 0.66 0.44583
Target:  5'- gCGCGCcCGGCUacucccggccguGCCGGuu--CCGGGCc -3'
miRNA:   3'- -GCGCGaGCUGG------------CGGCCuuucGGUCCG- -5'
33150 3' -59.8 NC_007497.1 + 41099 0.66 0.436296
Target:  5'- aGCGCUacgcCGACCaucuggagGCgCGGAAgcaGGCC-GGCg -3'
miRNA:   3'- gCGCGA----GCUGG--------CG-GCCUU---UCGGuCCG- -5'
33150 3' -59.8 NC_007497.1 + 2190 0.66 0.436296
Target:  5'- cCGCGCagGGCCaGUCGGucuacGAGUCgcgGGGCa -3'
miRNA:   3'- -GCGCGagCUGG-CGGCCu----UUCGG---UCCG- -5'
33150 3' -59.8 NC_007497.1 + 10209 0.66 0.436296
Target:  5'- uCGCGCaaacggCGGCCGCCc----GCgCAGGCu -3'
miRNA:   3'- -GCGCGa-----GCUGGCGGccuuuCG-GUCCG- -5'
33150 3' -59.8 NC_007497.1 + 14308 0.66 0.408416
Target:  5'- gGCGgccgguUUCGAacggaCGUCGGAc-GCCAGGCa -3'
miRNA:   3'- gCGC------GAGCUg----GCGGCCUuuCGGUCCG- -5'
33150 3' -59.8 NC_007497.1 + 15718 0.66 0.408416
Target:  5'- cCGUGCggGcACUGUCGGuauugcuGCCGGGCu -3'
miRNA:   3'- -GCGCGagC-UGGCGGCCuuu----CGGUCCG- -5'
33150 3' -59.8 NC_007497.1 + 36971 0.66 0.408416
Target:  5'- uCGCGCagUGAucagcCCGCCGGcgGcGCCggAGGCg -3'
miRNA:   3'- -GCGCGa-GCU-----GGCGGCCuuU-CGG--UCCG- -5'
33150 3' -59.8 NC_007497.1 + 35053 0.66 0.408416
Target:  5'- uCGCGCaUCGcgcGCaUGCCGGcAAGCUcGGCc -3'
miRNA:   3'- -GCGCG-AGC---UG-GCGGCCuUUCGGuCCG- -5'
33150 3' -59.8 NC_007497.1 + 13811 0.67 0.399374
Target:  5'- cCGcCGCaUgGGCCGCaCGGGAcGCCgcagGGGCc -3'
miRNA:   3'- -GC-GCG-AgCUGGCG-GCCUUuCGG----UCCG- -5'
33150 3' -59.8 NC_007497.1 + 44530 0.67 0.399374
Target:  5'- uCGCGUgugCGGCUcgagGCauuGGAGAGCCGcuuGGCa -3'
miRNA:   3'- -GCGCGa--GCUGG----CGg--CCUUUCGGU---CCG- -5'
33150 3' -59.8 NC_007497.1 + 27583 0.67 0.399374
Target:  5'- uGCGCgggCGGCUGCgGGgcGGCC--GCg -3'
miRNA:   3'- gCGCGa--GCUGGCGgCCuuUCGGucCG- -5'
33150 3' -59.8 NC_007497.1 + 30487 0.67 0.399374
Target:  5'- -cCGUUCGaaaccgGCCGCCuGGAucGGCCAcGGCu -3'
miRNA:   3'- gcGCGAGC------UGGCGG-CCUu-UCGGU-CCG- -5'
33150 3' -59.8 NC_007497.1 + 3382 0.67 0.39046
Target:  5'- gGCGCUCGguGCCGgCGGAcAGUCuccuuGGa -3'
miRNA:   3'- gCGCGAGC--UGGCgGCCUuUCGGu----CCg -5'
33150 3' -59.8 NC_007497.1 + 9942 0.67 0.39046
Target:  5'- gCGCGCgagaccgCGGCCGCgcaGGGcGAGCUcgagcguccgAGGCg -3'
miRNA:   3'- -GCGCGa------GCUGGCGg--CCU-UUCGG----------UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.