miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33150 5' -54.5 NC_007497.1 + 42837 0.66 0.735445
Target:  5'- cGAUgCGGCGUUCCguCGUCUuGAugGcUCc -3'
miRNA:   3'- aCUAgGUCGCAAGG--GCAGG-CUugC-AG- -5'
33150 5' -54.5 NC_007497.1 + 31099 0.66 0.72471
Target:  5'- cGAcCCAuGCGgcgUCCCGUgCGGccccugcgGCGUCc -3'
miRNA:   3'- aCUaGGU-CGCa--AGGGCAgGCU--------UGCAG- -5'
33150 5' -54.5 NC_007497.1 + 31033 0.66 0.72471
Target:  5'- cGAcCCAuGCGgcgUCCCGUgCGGccccugcgGCGUCc -3'
miRNA:   3'- aCUaGGU-CGCa--AGGGCAgGCU--------UGCAG- -5'
33150 5' -54.5 NC_007497.1 + 11392 0.66 0.72471
Target:  5'- cGggCgGGCGgcgCCCGuUCCGAgccggaaagcagGCGUCu -3'
miRNA:   3'- aCuaGgUCGCaa-GGGC-AGGCU------------UGCAG- -5'
33150 5' -54.5 NC_007497.1 + 17755 0.66 0.691986
Target:  5'- gUGAUCgcuucaCGGCGaUCCUGccgUCGGGCGUCg -3'
miRNA:   3'- -ACUAG------GUCGCaAGGGCa--GGCUUGCAG- -5'
33150 5' -54.5 NC_007497.1 + 28184 0.66 0.680943
Target:  5'- gUGAUCCAguGCGUcggcUCCCGgaggcCCGAcaGCGg- -3'
miRNA:   3'- -ACUAGGU--CGCA----AGGGCa----GGCU--UGCag -5'
33150 5' -54.5 NC_007497.1 + 309 0.67 0.636406
Target:  5'- cUGAUCCgaaGGCGUUCCUGaUCGcAGCGa- -3'
miRNA:   3'- -ACUAGG---UCGCAAGGGCaGGC-UUGCag -5'
33150 5' -54.5 NC_007497.1 + 41649 0.67 0.625235
Target:  5'- cUGG-CCGGCG---CCGUCCGAGCG-Cg -3'
miRNA:   3'- -ACUaGGUCGCaagGGCAGGCUUGCaG- -5'
33150 5' -54.5 NC_007497.1 + 14301 0.68 0.61407
Target:  5'- cGAUCCAgGCGgccggUUUCGaaCGGACGUCg -3'
miRNA:   3'- aCUAGGU-CGCa----AGGGCagGCUUGCAG- -5'
33150 5' -54.5 NC_007497.1 + 22573 0.68 0.591799
Target:  5'- --cUCCGGCGUaucgauauaUCCCGUCauguCGUCg -3'
miRNA:   3'- acuAGGUCGCA---------AGGGCAGgcuuGCAG- -5'
33150 5' -54.5 NC_007497.1 + 34213 0.7 0.498453
Target:  5'- cUGAUCCucgucagugacgaucGGCGca-CCGucUCCGAACGUCg -3'
miRNA:   3'- -ACUAGG---------------UCGCaagGGC--AGGCUUGCAG- -5'
33150 5' -54.5 NC_007497.1 + 30311 0.74 0.273183
Target:  5'- gGGUCC-GCGgucggaUUCCCGUCCGGgaaauucaccGCGUCg -3'
miRNA:   3'- aCUAGGuCGC------AAGGGCAGGCU----------UGCAG- -5'
33150 5' -54.5 NC_007497.1 + 25693 0.74 0.271777
Target:  5'- cGAuUCCAGCGauguacgugcgCCCGUCCGAggugauuuGCGUCu -3'
miRNA:   3'- aCU-AGGUCGCaa---------GGGCAGGCU--------UGCAG- -5'
33150 5' -54.5 NC_007497.1 + 28364 1.1 0.000805
Target:  5'- cUGAUCCAGCGUUCCCGUCCGAACGUCg -3'
miRNA:   3'- -ACUAGGUCGCAAGGGCAGGCUUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.