miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33151 3' -57 NC_007497.1 + 29474 0.65 0.563163
Target:  5'- gUGCGCaucaugccuccuucGGC-UCGUCGAGCAUCcaGUCGa -3'
miRNA:   3'- aACGCG--------------CUGuGGCGGCUCGUAG--UAGC- -5'
33151 3' -57 NC_007497.1 + 12415 0.66 0.555509
Target:  5'- -gGCGCGGgugauugaucCACuCGCCGAGCccgAUCAUg- -3'
miRNA:   3'- aaCGCGCU----------GUG-GCGGCUCG---UAGUAgc -5'
33151 3' -57 NC_007497.1 + 31692 0.66 0.533817
Target:  5'- cUGCuCGACGgUGCCGuGCGUgGUCu -3'
miRNA:   3'- aACGcGCUGUgGCGGCuCGUAgUAGc -5'
33151 3' -57 NC_007497.1 + 9943 0.66 0.533817
Target:  5'- -cGCGCGAgACCGCggccgcgcagggCGAGCucgagCGUCc -3'
miRNA:   3'- aaCGCGCUgUGGCG------------GCUCGua---GUAGc -5'
33151 3' -57 NC_007497.1 + 39995 0.66 0.523083
Target:  5'- -gGUGCGGCAUgaCGCCGAGCGa----- -3'
miRNA:   3'- aaCGCGCUGUG--GCGGCUCGUaguagc -5'
33151 3' -57 NC_007497.1 + 30515 0.66 0.523083
Target:  5'- aUGCGCca-GCUGCCacGCAUCAUCa -3'
miRNA:   3'- aACGCGcugUGGCGGcuCGUAGUAGc -5'
33151 3' -57 NC_007497.1 + 14900 0.67 0.501874
Target:  5'- aUUGC-CGaucacGCACuCGCCGAGUAUCcgCGc -3'
miRNA:   3'- -AACGcGC-----UGUG-GCGGCUCGUAGuaGC- -5'
33151 3' -57 NC_007497.1 + 34868 0.67 0.501874
Target:  5'- -cGCGCGAuCACgGCCGcauacGGCGUCccggCGa -3'
miRNA:   3'- aaCGCGCU-GUGgCGGC-----UCGUAGua--GC- -5'
33151 3' -57 NC_007497.1 + 8015 0.67 0.491411
Target:  5'- cUGCGCGAgGCgG-CGGGCGUCGa-- -3'
miRNA:   3'- aACGCGCUgUGgCgGCUCGUAGUagc -5'
33151 3' -57 NC_007497.1 + 21289 0.67 0.491411
Target:  5'- -gGCGCGGCGgcgggCGCCG-GCGUCGUg- -3'
miRNA:   3'- aaCGCGCUGUg----GCGGCuCGUAGUAgc -5'
33151 3' -57 NC_007497.1 + 29524 0.67 0.49037
Target:  5'- aUGCGCGccucgcgGCGCUcgGCCG-GCGUCcgCGg -3'
miRNA:   3'- aACGCGC-------UGUGG--CGGCuCGUAGuaGC- -5'
33151 3' -57 NC_007497.1 + 8719 0.67 0.470797
Target:  5'- gUGCGUGAUgguggucguGCCGCUGAuGCGgcauuugCGUCGa -3'
miRNA:   3'- aACGCGCUG---------UGGCGGCU-CGUa------GUAGC- -5'
33151 3' -57 NC_007497.1 + 9507 0.67 0.460656
Target:  5'- -aGUGCGuCGCUugcaGCCGGGCGgcUCGUCa -3'
miRNA:   3'- aaCGCGCuGUGG----CGGCUCGU--AGUAGc -5'
33151 3' -57 NC_007497.1 + 38978 0.67 0.449636
Target:  5'- gUGCGCcgaccgcucgGGCACCGucuuccagcucuuCCGGGCAcUCGUCGc -3'
miRNA:   3'- aACGCG----------CUGUGGC-------------GGCUCGU-AGUAGC- -5'
33151 3' -57 NC_007497.1 + 10679 0.68 0.440729
Target:  5'- cUUGCGCGAC-UCGUCGAcGUGuUCGUCGc -3'
miRNA:   3'- -AACGCGCUGuGGCGGCU-CGU-AGUAGC- -5'
33151 3' -57 NC_007497.1 + 5810 0.68 0.43095
Target:  5'- --cCGCGAguCCGCCcGGCAgcuUCGUCGg -3'
miRNA:   3'- aacGCGCUguGGCGGcUCGU---AGUAGC- -5'
33151 3' -57 NC_007497.1 + 29988 0.68 0.43095
Target:  5'- -aGcCGCGGucauuUGCCGCCGAGCA--GUCGg -3'
miRNA:   3'- aaC-GCGCU-----GUGGCGGCUCGUagUAGC- -5'
33151 3' -57 NC_007497.1 + 42820 0.68 0.43095
Target:  5'- cUGCccCGACGCCGCCGcgaugcGGCGUucCGUCGu -3'
miRNA:   3'- aACGc-GCUGUGGCGGC------UCGUA--GUAGC- -5'
33151 3' -57 NC_007497.1 + 31210 0.68 0.42901
Target:  5'- cUUGCGgcccccuUGACcugcaguGCCGUCGAGCcAUCGUCGg -3'
miRNA:   3'- -AACGC-------GCUG-------UGGCGGCUCG-UAGUAGC- -5'
33151 3' -57 NC_007497.1 + 9444 0.68 0.4213
Target:  5'- -aGCGCGAaGCUGUCucaaGGCAUCAUCu -3'
miRNA:   3'- aaCGCGCUgUGGCGGc---UCGUAGUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.