miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33151 5' -53.4 NC_007497.1 + 43266 0.66 0.728342
Target:  5'- cAUCGCGAuUCGGUGAcCGGcgcggaGCUCAu- -3'
miRNA:   3'- -UAGCGCU-AGUCGCU-GCCaa----CGAGUuu -5'
33151 5' -53.4 NC_007497.1 + 32961 0.66 0.717176
Target:  5'- uUCGUGAaaucgucacgUCGGCGACGGaacucaucGCUCAc- -3'
miRNA:   3'- uAGCGCU----------AGUCGCUGCCaa------CGAGUuu -5'
33151 5' -53.4 NC_007497.1 + 41339 0.66 0.705918
Target:  5'- -cCGCGGUgAGgGACGGUggcgGCUggCAAAc -3'
miRNA:   3'- uaGCGCUAgUCgCUGCCAa---CGA--GUUU- -5'
33151 5' -53.4 NC_007497.1 + 25795 0.66 0.705918
Target:  5'- -gCGCGAaguUCGGUGACGGUUugGC-CGAu -3'
miRNA:   3'- uaGCGCU---AGUCGCUGCCAA--CGaGUUu -5'
33151 5' -53.4 NC_007497.1 + 5040 0.66 0.683177
Target:  5'- cUCGaCGGUCcaCGuCGGUUGCUCAGc -3'
miRNA:   3'- uAGC-GCUAGucGCuGCCAACGAGUUu -5'
33151 5' -53.4 NC_007497.1 + 16470 0.66 0.683177
Target:  5'- -gCGUGGaCuGCGGCGGccUGCUCGAAg -3'
miRNA:   3'- uaGCGCUaGuCGCUGCCa-ACGAGUUU- -5'
33151 5' -53.4 NC_007497.1 + 4099 0.67 0.671719
Target:  5'- --gGCGGUCAaagacggauucGCGACGGgcaaGCUCGAc -3'
miRNA:   3'- uagCGCUAGU-----------CGCUGCCaa--CGAGUUu -5'
33151 5' -53.4 NC_007497.1 + 14215 0.67 0.614057
Target:  5'- --aGCGAUCGGCGGCGaugUGCUg--- -3'
miRNA:   3'- uagCGCUAGUCGCUGCca-ACGAguuu -5'
33151 5' -53.4 NC_007497.1 + 5575 0.68 0.591034
Target:  5'- -gCGCG-UCGGCGGCGGccUGCUgAAu -3'
miRNA:   3'- uaGCGCuAGUCGCUGCCa-ACGAgUUu -5'
33151 5' -53.4 NC_007497.1 + 9851 0.68 0.556808
Target:  5'- gGUCGCacaGGUC-GCGACGGcccGCUCGAAu -3'
miRNA:   3'- -UAGCG---CUAGuCGCUGCCaa-CGAGUUU- -5'
33151 5' -53.4 NC_007497.1 + 23107 0.69 0.54552
Target:  5'- --aGCGAUCAGCGGCGGc-GUcgUCAAu -3'
miRNA:   3'- uagCGCUAGUCGCUGCCaaCG--AGUUu -5'
33151 5' -53.4 NC_007497.1 + 5844 0.69 0.501192
Target:  5'- --aGCGAgc-GCGGCGaGUUGCUCGAGg -3'
miRNA:   3'- uagCGCUaguCGCUGC-CAACGAGUUU- -5'
33151 5' -53.4 NC_007497.1 + 28837 1.04 0.002153
Target:  5'- cAUCGCGAUCAGCGACGGUUGCUCAAAc -3'
miRNA:   3'- -UAGCGCUAGUCGCUGCCAACGAGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.