miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33152 3' -53 NC_007497.1 + 26757 0.66 0.786872
Target:  5'- aUGgcgGCACGAccguCA-CCGGCCGcUGCu -3'
miRNA:   3'- gACa--CGUGCUuu--GUcGGUCGGCuACG- -5'
33152 3' -53 NC_007497.1 + 28038 0.68 0.66665
Target:  5'- ---cGCACGcgcacCAGCCAGCCGGauuucGCa -3'
miRNA:   3'- gacaCGUGCuuu--GUCGGUCGGCUa----CG- -5'
33152 3' -53 NC_007497.1 + 35578 0.67 0.689308
Target:  5'- ---cGCGCGAucgcguCGGCCAcGCCGG-GCa -3'
miRNA:   3'- gacaCGUGCUuu----GUCGGU-CGGCUaCG- -5'
33152 3' -53 NC_007497.1 + 19793 0.67 0.700554
Target:  5'- -gGUcGCAcCGAucAACAGCCAGaucagcgCGGUGCa -3'
miRNA:   3'- gaCA-CGU-GCU--UUGUCGGUCg------GCUACG- -5'
33152 3' -53 NC_007497.1 + 23624 0.66 0.733812
Target:  5'- ---aGCACGcgGCcGCCGGCCGugacccacUGCg -3'
miRNA:   3'- gacaCGUGCuuUGuCGGUCGGCu-------ACG- -5'
33152 3' -53 NC_007497.1 + 15242 0.66 0.755455
Target:  5'- cCUGUGgcgcauccCGCGGAc--GCCGGCCGA-GCg -3'
miRNA:   3'- -GACAC--------GUGCUUuguCGGUCGGCUaCG- -5'
33152 3' -53 NC_007497.1 + 13791 0.66 0.76608
Target:  5'- ---cGCACGGGAC-GCCgcaggGGCCGccGCa -3'
miRNA:   3'- gacaCGUGCUUUGuCGG-----UCGGCuaCG- -5'
33152 3' -53 NC_007497.1 + 13824 0.66 0.76608
Target:  5'- ---cGCACGGGAC-GCCgcaggGGCCGccGCa -3'
miRNA:   3'- gacaCGUGCUUUGuCGG-----UCGGCuaCG- -5'
33152 3' -53 NC_007497.1 + 13869 0.66 0.76608
Target:  5'- ---cGCACGGGAC-GCCgcaugGGCCGccGCa -3'
miRNA:   3'- gacaCGUGCUUUGuCGG-----UCGGCuaCG- -5'
33152 3' -53 NC_007497.1 + 34578 0.68 0.655263
Target:  5'- --cUGCGCG-GGCGGCC-GCCGuuUGCg -3'
miRNA:   3'- gacACGUGCuUUGUCGGuCGGCu-ACG- -5'
33152 3' -53 NC_007497.1 + 2546 0.68 0.632431
Target:  5'- -cGUGCGCGc--CGG-CGGCCGcgGCg -3'
miRNA:   3'- gaCACGUGCuuuGUCgGUCGGCuaCG- -5'
33152 3' -53 NC_007497.1 + 39271 0.69 0.598208
Target:  5'- -cGUGUACGGAucgcGCAGCacgcgaaccCCGAUGCg -3'
miRNA:   3'- gaCACGUGCUU----UGUCGguc------GGCUACG- -5'
33152 3' -53 NC_007497.1 + 15606 0.77 0.207494
Target:  5'- -gGUGCugG-AACAGCgAGCCGA-GCg -3'
miRNA:   3'- gaCACGugCuUUGUCGgUCGGCUaCG- -5'
33152 3' -53 NC_007497.1 + 44643 0.75 0.271843
Target:  5'- ---gGCGCGAccCGGCC-GCCGAUGCu -3'
miRNA:   3'- gacaCGUGCUuuGUCGGuCGGCUACG- -5'
33152 3' -53 NC_007497.1 + 2410 0.72 0.415988
Target:  5'- cCUGUGcCGCGAugucgcgcuuAGCAGU--GCCGGUGCg -3'
miRNA:   3'- -GACAC-GUGCU----------UUGUCGguCGGCUACG- -5'
33152 3' -53 NC_007497.1 + 27105 0.71 0.487482
Target:  5'- ---aGCggaGCGGAuACGGCC-GCCGAUGCg -3'
miRNA:   3'- gacaCG---UGCUU-UGUCGGuCGGCUACG- -5'
33152 3' -53 NC_007497.1 + 11707 0.7 0.519861
Target:  5'- ---cGCGCGAGugaAGCaucgaUAGCCGAUGCg -3'
miRNA:   3'- gacaCGUGCUUug-UCG-----GUCGGCUACG- -5'
33152 3' -53 NC_007497.1 + 1827 0.69 0.563138
Target:  5'- ---cGCGCGAuccgauaGACGGUCguuaccagcGGCCGGUGCa -3'
miRNA:   3'- gacaCGUGCU-------UUGUCGG---------UCGGCUACG- -5'
33152 3' -53 NC_007497.1 + 23494 0.69 0.564261
Target:  5'- -gGUGCACGAcGCcggcGCCcGCCGccGCg -3'
miRNA:   3'- gaCACGUGCUuUGu---CGGuCGGCuaCG- -5'
33152 3' -53 NC_007497.1 + 34009 0.69 0.565386
Target:  5'- -cGUGCGCGcGccccugucggccGCGGCCccugccguaucgauuGCCGAUGCg -3'
miRNA:   3'- gaCACGUGCuU------------UGUCGGu--------------CGGCUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.