miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33153 3' -51.3 NC_007497.1 + 9905 0.66 0.850832
Target:  5'- -aGUGUC-CAUGGAAGGUCGCUGg-- -3'
miRNA:   3'- cgCACAGcGUGUUUUUCGGCGGCauu -5'
33153 3' -51.3 NC_007497.1 + 44353 0.66 0.848135
Target:  5'- cGCGUGUCGCgACGAugacgccuggaucguGGCgCGCUGg-- -3'
miRNA:   3'- -CGCACAGCG-UGUUuu-------------UCG-GCGGCauu -5'
33153 3' -51.3 NC_007497.1 + 21515 0.66 0.841755
Target:  5'- aGCGUGUCGaccaGCucgucgcAGCCGCCc--- -3'
miRNA:   3'- -CGCACAGCg---UGuuuu---UCGGCGGcauu -5'
33153 3' -51.3 NC_007497.1 + 23913 0.66 0.841755
Target:  5'- uCGUGUCGC-CAuu--GCagGCCGUGAu -3'
miRNA:   3'- cGCACAGCGuGUuuuuCGg-CGGCAUU- -5'
33153 3' -51.3 NC_007497.1 + 2417 0.66 0.832435
Target:  5'- cGCGaUGUCGCGCuu--AGCaguGCCGg-- -3'
miRNA:   3'- -CGC-ACAGCGUGuuuuUCGg--CGGCauu -5'
33153 3' -51.3 NC_007497.1 + 4413 0.66 0.832435
Target:  5'- uCGUuaCGCACGAAGGGCCaGUCGUc- -3'
miRNA:   3'- cGCAcaGCGUGUUUUUCGG-CGGCAuu -5'
33153 3' -51.3 NC_007497.1 + 2544 0.66 0.82288
Target:  5'- gGCGUG-CGCGCcGGcGGCCGCgGc-- -3'
miRNA:   3'- -CGCACaGCGUGuUUuUCGGCGgCauu -5'
33153 3' -51.3 NC_007497.1 + 38328 0.67 0.803114
Target:  5'- aCGaUGUCGUACAGuuGaUCGCCGUAGc -3'
miRNA:   3'- cGC-ACAGCGUGUUuuUcGGCGGCAUU- -5'
33153 3' -51.3 NC_007497.1 + 15995 0.67 0.782553
Target:  5'- gGCgGUGUCGCGCAAAuguuGAGcCCGCa---- -3'
miRNA:   3'- -CG-CACAGCGUGUUU----UUC-GGCGgcauu -5'
33153 3' -51.3 NC_007497.1 + 41459 0.68 0.761299
Target:  5'- aGCGUGcCGCGCAAc-AGCgCGCCc--- -3'
miRNA:   3'- -CGCACaGCGUGUUuuUCG-GCGGcauu -5'
33153 3' -51.3 NC_007497.1 + 40381 0.68 0.750444
Target:  5'- cGCGgaacagCGC-CAAccgggcccgucAGGGCCGCCGUGAg -3'
miRNA:   3'- -CGCaca---GCGuGUU-----------UUUCGGCGGCAUU- -5'
33153 3' -51.3 NC_007497.1 + 34571 0.68 0.750444
Target:  5'- aGCGagccUGCGCGGGcGGCCGCCGUu- -3'
miRNA:   3'- -CGCaca-GCGUGUUUuUCGGCGGCAuu -5'
33153 3' -51.3 NC_007497.1 + 26360 0.68 0.739456
Target:  5'- uGCGUGUCGC-CugccGAGCCGUCc--- -3'
miRNA:   3'- -CGCACAGCGuGuuu-UUCGGCGGcauu -5'
33153 3' -51.3 NC_007497.1 + 37545 0.68 0.739456
Target:  5'- -gGUGUCGCuCGAAuAGUCGUCGg-- -3'
miRNA:   3'- cgCACAGCGuGUUUuUCGGCGGCauu -5'
33153 3' -51.3 NC_007497.1 + 16642 0.68 0.728348
Target:  5'- aGCGUGgcaacUCGCGCAugcgcuacgccGGGAGCgCGCCGc-- -3'
miRNA:   3'- -CGCAC-----AGCGUGU-----------UUUUCG-GCGGCauu -5'
33153 3' -51.3 NC_007497.1 + 5720 0.69 0.705824
Target:  5'- -aGUGaUCGCACGGcaccGAGCCGUCGa-- -3'
miRNA:   3'- cgCAC-AGCGUGUUu---UUCGGCGGCauu -5'
33153 3' -51.3 NC_007497.1 + 5519 0.69 0.65992
Target:  5'- cGCGUGcUGCGCGAuccguacacggcGAAGCCGUaCGUAc -3'
miRNA:   3'- -CGCACaGCGUGUU------------UUUCGGCG-GCAUu -5'
33153 3' -51.3 NC_007497.1 + 11735 0.7 0.590429
Target:  5'- aGCGagagGUCGCGCGAGAgcuGGCCGCg---- -3'
miRNA:   3'- -CGCa---CAGCGUGUUUU---UCGGCGgcauu -5'
33153 3' -51.3 NC_007497.1 + 39858 0.71 0.578921
Target:  5'- aCGUGgcgcaacuggguUCGCACuGAAAAGCCGCUGg-- -3'
miRNA:   3'- cGCAC------------AGCGUG-UUUUUCGGCGGCauu -5'
33153 3' -51.3 NC_007497.1 + 10008 0.71 0.556061
Target:  5'- aGCGacgcGUCGCGuuGGAGGCCGCCGc-- -3'
miRNA:   3'- -CGCa---CAGCGUguUUUUCGGCGGCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.