miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33153 5' -55.3 NC_007497.1 + 40836 0.66 0.688422
Target:  5'- --cUugGCCGAugCGGg--UCGaCGCCg -3'
miRNA:   3'- uaaGugCGGCUugGCCgcaAGC-GUGG- -5'
33153 5' -55.3 NC_007497.1 + 39335 0.66 0.688422
Target:  5'- ----uCGCCGAagagaAUCGGCGUcgaguUCGcCGCCa -3'
miRNA:   3'- uaaguGCGGCU-----UGGCCGCA-----AGC-GUGG- -5'
33153 5' -55.3 NC_007497.1 + 41711 0.66 0.688422
Target:  5'- ---uGCGCCGAugCugcGGUGUUCGagaACUg -3'
miRNA:   3'- uaagUGCGGCUugG---CCGCAAGCg--UGG- -5'
33153 5' -55.3 NC_007497.1 + 4210 0.66 0.688422
Target:  5'- --gCGCGCCGGGuauucCCGGUccaUGCGCCg -3'
miRNA:   3'- uaaGUGCGGCUU-----GGCCGcaaGCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 32357 0.66 0.685119
Target:  5'- uGUUCAUGaUCGGGCuCGGCGaguggaucaaucaccCGCGCCa -3'
miRNA:   3'- -UAAGUGC-GGCUUG-GCCGCaa-------------GCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 34979 0.66 0.677394
Target:  5'- -cUCGCGCCucGGCCaGC-UUCGCAUCc -3'
miRNA:   3'- uaAGUGCGGc-UUGGcCGcAAGCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 39856 0.66 0.677394
Target:  5'- --cCACGUggCGcAACUGG-GUUCGCACUg -3'
miRNA:   3'- uaaGUGCG--GC-UUGGCCgCAAGCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 35157 0.66 0.677394
Target:  5'- -gUCGCgGCCGGcgcGCCGGgUGUgaaGCAUCg -3'
miRNA:   3'- uaAGUG-CGGCU---UGGCC-GCAag-CGUGG- -5'
33153 5' -55.3 NC_007497.1 + 44190 0.66 0.677394
Target:  5'- aGUUCGCaugGCUGuuCUGGUGUUC-CGCCg -3'
miRNA:   3'- -UAAGUG---CGGCuuGGCCGCAAGcGUGG- -5'
33153 5' -55.3 NC_007497.1 + 26940 0.66 0.666322
Target:  5'- --cCGCGCCGAGaCCGGa--UCgGCAUCg -3'
miRNA:   3'- uaaGUGCGGCUU-GGCCgcaAG-CGUGG- -5'
33153 5' -55.3 NC_007497.1 + 26001 0.66 0.666322
Target:  5'- --aCACGCCGGcauACaUGGUGgcgUCGC-CCg -3'
miRNA:   3'- uaaGUGCGGCU---UG-GCCGCa--AGCGuGG- -5'
33153 5' -55.3 NC_007497.1 + 21951 0.66 0.662994
Target:  5'- -aUgGCGCCGcAACugacguuucgaguuCGGCGUcUGCGCCc -3'
miRNA:   3'- uaAgUGCGGC-UUG--------------GCCGCAaGCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 23863 0.66 0.655218
Target:  5'- --gCGCGCgCGGcacucauCCGGCGUgaaGCGCUg -3'
miRNA:   3'- uaaGUGCG-GCUu------GGCCGCAag-CGUGG- -5'
33153 5' -55.3 NC_007497.1 + 4192 0.66 0.655218
Target:  5'- gAUUCGcCGCCaauuCCGGCGccaugCGCACg -3'
miRNA:   3'- -UAAGU-GCGGcuu-GGCCGCaa---GCGUGg -5'
33153 5' -55.3 NC_007497.1 + 10637 0.66 0.655218
Target:  5'- -gUCAagGCCGAAaaucUCGGCGUcgaggaaaagUCGCGCg -3'
miRNA:   3'- uaAGUg-CGGCUU----GGCCGCA----------AGCGUGg -5'
33153 5' -55.3 NC_007497.1 + 34885 0.66 0.644091
Target:  5'- --aUACGgCGucCCGGCGaUUCGCGuCCc -3'
miRNA:   3'- uaaGUGCgGCuuGGCCGC-AAGCGU-GG- -5'
33153 5' -55.3 NC_007497.1 + 37128 0.66 0.644091
Target:  5'- aAUUCGCaGCCGGACCaGGUGagUCGgAUg -3'
miRNA:   3'- -UAAGUG-CGGCUUGG-CCGCa-AGCgUGg -5'
33153 5' -55.3 NC_007497.1 + 28033 0.66 0.629612
Target:  5'- ---uGCGCCGcacgcgcaccagccAGCCGGauUUCGCACUc -3'
miRNA:   3'- uaagUGCGGC--------------UUGGCCgcAAGCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 11347 0.67 0.621815
Target:  5'- -gUCGCGCgu-AUCGGCGUcaaUGCGCCu -3'
miRNA:   3'- uaAGUGCGgcuUGGCCGCAa--GCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 42243 0.67 0.599576
Target:  5'- ---uGCGCCGcggccGCCGGCG--CGCACg -3'
miRNA:   3'- uaagUGCGGCu----UGGCCGCaaGCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.