miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33153 5' -55.3 NC_007497.1 + 30030 1.09 0.000838
Target:  5'- uAUUCACGCCGAACCGGCGUUCGCACCc -3'
miRNA:   3'- -UAAGUGCGGCUUGGCCGCAAGCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 39611 0.75 0.226292
Target:  5'- -aUgGCGCCGAACgGGUGcUUCGCGgCa -3'
miRNA:   3'- uaAgUGCGGCUUGgCCGC-AAGCGUgG- -5'
33153 5' -55.3 NC_007497.1 + 3542 0.74 0.232371
Target:  5'- gAUUCGCGCUGAccACCGGC-UUgGCGCg -3'
miRNA:   3'- -UAAGUGCGGCU--UGGCCGcAAgCGUGg -5'
33153 5' -55.3 NC_007497.1 + 14992 0.74 0.238587
Target:  5'- -gUCGCGCCGAcuccgACCGaccaguucGCGcUCGCGCCc -3'
miRNA:   3'- uaAGUGCGGCU-----UGGC--------CGCaAGCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 6867 0.74 0.251435
Target:  5'- cAUUCAUGC--GGCCGGCGUUCGaCGCg -3'
miRNA:   3'- -UAAGUGCGgcUUGGCCGCAAGC-GUGg -5'
33153 5' -55.3 NC_007497.1 + 15098 0.73 0.264848
Target:  5'- cUUUGCGuuGAACC-GCGUggCGCGCCg -3'
miRNA:   3'- uAAGUGCggCUUGGcCGCAa-GCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 38150 0.73 0.300908
Target:  5'- -aUCACGuUCGcGCCGGCGaccguggCGCGCCu -3'
miRNA:   3'- uaAGUGC-GGCuUGGCCGCaa-----GCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 35361 0.72 0.30856
Target:  5'- cUUCGCGCUGGcGCCGGUcgcuucGUUCGCucgACCa -3'
miRNA:   3'- uAAGUGCGGCU-UGGCCG------CAAGCG---UGG- -5'
33153 5' -55.3 NC_007497.1 + 21290 0.72 0.31636
Target:  5'- --gCGCGgCGGcgggcGCCGGCGUcgUGCACCu -3'
miRNA:   3'- uaaGUGCgGCU-----UGGCCGCAa-GCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 16261 0.72 0.324307
Target:  5'- --cUACGCCGAcgGCCGGCG--CGCuCCg -3'
miRNA:   3'- uaaGUGCGGCU--UGGCCGCaaGCGuGG- -5'
33153 5' -55.3 NC_007497.1 + 41161 0.71 0.349033
Target:  5'- -aUCGcCGCCGcaucgUCGGCGUUCGcCGCCc -3'
miRNA:   3'- uaAGU-GCGGCuu---GGCCGCAAGC-GUGG- -5'
33153 5' -55.3 NC_007497.1 + 2908 0.71 0.349033
Target:  5'- cUUCACGgacguuCCGAACUGGCGUgauggcgggCgGCGCCa -3'
miRNA:   3'- uAAGUGC------GGCUUGGCCGCAa--------G-CGUGG- -5'
33153 5' -55.3 NC_007497.1 + 4293 0.71 0.369761
Target:  5'- --cCACGCCGGgcGCUGGCGaagacguugcagcgUCGCugCa -3'
miRNA:   3'- uaaGUGCGGCU--UGGCCGCa-------------AGCGugG- -5'
33153 5' -55.3 NC_007497.1 + 1143 0.71 0.38404
Target:  5'- cUUCGCGCgGAucauGCCGGCcugcccaGCACCa -3'
miRNA:   3'- uAAGUGCGgCU----UGGCCGcaag---CGUGG- -5'
33153 5' -55.3 NC_007497.1 + 16160 0.71 0.393149
Target:  5'- -gUUGCGCUGAucCCGGCa--CGCACCg -3'
miRNA:   3'- uaAGUGCGGCUu-GGCCGcaaGCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 6258 0.7 0.402397
Target:  5'- --aCAUGCCGAGCCguGGCGccagcgacUCGCuACCa -3'
miRNA:   3'- uaaGUGCGGCUUGG--CCGCa-------AGCG-UGG- -5'
33153 5' -55.3 NC_007497.1 + 20994 0.7 0.402397
Target:  5'- --gCACGCCGAGCCugaagGGCcacaCGUACCa -3'
miRNA:   3'- uaaGUGCGGCUUGG-----CCGcaa-GCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 20924 0.7 0.4213
Target:  5'- cUUCACGCCGGAUgagUGcCGcgCGCGCCu -3'
miRNA:   3'- uAAGUGCGGCUUG---GCcGCaaGCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 2443 0.7 0.43095
Target:  5'- ---uGCGCCGc-UgGGCGUUCGCGCg -3'
miRNA:   3'- uaagUGCGGCuuGgCCGCAAGCGUGg -5'
33153 5' -55.3 NC_007497.1 + 7930 0.7 0.43095
Target:  5'- aAUUCAUGCCGAugCccgaaugggacGGCGUuaccgUCGCugUg -3'
miRNA:   3'- -UAAGUGCGGCUugG-----------CCGCA-----AGCGugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.