miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33153 5' -55.3 NC_007497.1 + 42243 0.67 0.599576
Target:  5'- ---uGCGCCGcggccGCCGGCG--CGCACg -3'
miRNA:   3'- uaagUGCGGCu----UGGCCGCaaGCGUGg -5'
33153 5' -55.3 NC_007497.1 + 29384 0.67 0.599576
Target:  5'- -gUCGCgGCCGAcgucgagaaaACCGGCGUccugguagUGCGCg -3'
miRNA:   3'- uaAGUG-CGGCU----------UGGCCGCAa-------GCGUGg -5'
33153 5' -55.3 NC_007497.1 + 8750 0.67 0.599576
Target:  5'- cAUUUGCGUCGAAUgCGGCGagCGUGCa -3'
miRNA:   3'- -UAAGUGCGGCUUG-GCCGCaaGCGUGg -5'
33153 5' -55.3 NC_007497.1 + 16002 0.67 0.592923
Target:  5'- --gCGCGCCGAuaaACCGGCcuugggcuaccgCGCGCg -3'
miRNA:   3'- uaaGUGCGGCU---UGGCCGcaa---------GCGUGg -5'
33153 5' -55.3 NC_007497.1 + 9976 0.67 0.588494
Target:  5'- ---aGCGuCCGAggcgucGCUGGCGUUgGCGCa -3'
miRNA:   3'- uaagUGC-GGCU------UGGCCGCAAgCGUGg -5'
33153 5' -55.3 NC_007497.1 + 9920 0.67 0.588494
Target:  5'- ---gACGCCGuAugCGGCcGUgaUCGCGCg -3'
miRNA:   3'- uaagUGCGGC-UugGCCG-CA--AGCGUGg -5'
33153 5' -55.3 NC_007497.1 + 19763 0.67 0.581862
Target:  5'- --gCAUGCgGAGCCGacgacggacaugcaaGUGgUCGCACCg -3'
miRNA:   3'- uaaGUGCGgCUUGGC---------------CGCaAGCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 11968 0.67 0.57745
Target:  5'- -cUCACGuuGAGCgcgauUGGCGUguuggCGCgaGCCg -3'
miRNA:   3'- uaAGUGCggCUUG-----GCCGCAa----GCG--UGG- -5'
33153 5' -55.3 NC_007497.1 + 17762 0.67 0.57745
Target:  5'- cUUCACGgCGAuccuGCCgucgGGCG-UCGCACa -3'
miRNA:   3'- uAAGUGCgGCU----UGG----CCGCaAGCGUGg -5'
33153 5' -55.3 NC_007497.1 + 18686 0.67 0.57745
Target:  5'- uUUCGCgGCCaGAUCGGCaaaaGUUCGCuggGCCa -3'
miRNA:   3'- uAAGUG-CGGcUUGGCCG----CAAGCG---UGG- -5'
33153 5' -55.3 NC_007497.1 + 28696 0.67 0.573045
Target:  5'- -cUCACGaCCGAA-CGGCGgauugagccagaCGCGCCc -3'
miRNA:   3'- uaAGUGC-GGCUUgGCCGCaa----------GCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 41072 0.67 0.566452
Target:  5'- --gCGCGCCGAugUuGCGaa-GCGCCg -3'
miRNA:   3'- uaaGUGCGGCUugGcCGCaagCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 4257 0.68 0.555509
Target:  5'- -aUCACGCgaUGAG-CGGCGUgugCGuCGCCg -3'
miRNA:   3'- uaAGUGCG--GCUUgGCCGCAa--GC-GUGG- -5'
33153 5' -55.3 NC_007497.1 + 24928 0.68 0.555509
Target:  5'- --cCugGCCGAccaucgccugcACCuuugauaguugGGCGUUCGC-CCg -3'
miRNA:   3'- uaaGugCGGCU-----------UGG-----------CCGCAAGCGuGG- -5'
33153 5' -55.3 NC_007497.1 + 18788 0.68 0.555509
Target:  5'- ---gACGCCaccauguauGCCGGCGUguggUCGCugCa -3'
miRNA:   3'- uaagUGCGGcu-------UGGCCGCA----AGCGugG- -5'
33153 5' -55.3 NC_007497.1 + 42114 0.68 0.555509
Target:  5'- -cUCGCGCCGca-CGGUGaugaaGCACCu -3'
miRNA:   3'- uaAGUGCGGCuugGCCGCaag--CGUGG- -5'
33153 5' -55.3 NC_007497.1 + 9725 0.68 0.555509
Target:  5'- --gCAgGCCGAgcuuGCCGGCaugCGCGCg -3'
miRNA:   3'- uaaGUgCGGCU----UGGCCGcaaGCGUGg -5'
33153 5' -55.3 NC_007497.1 + 36968 0.68 0.554417
Target:  5'- aGUUCGCGCaguGAucagcccGCCGGCG---GCGCCg -3'
miRNA:   3'- -UAAGUGCGg--CU-------UGGCCGCaagCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 15100 0.68 0.544627
Target:  5'- --gCGCaGCCGAGCaUGGcCGaUCGUACCg -3'
miRNA:   3'- uaaGUG-CGGCUUG-GCC-GCaAGCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 3324 0.68 0.544627
Target:  5'- uUUCugauCGCCGuccAUCGGCGUgcggCGCuCCa -3'
miRNA:   3'- uAAGu---GCGGCu--UGGCCGCAa---GCGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.