miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33153 5' -55.3 NC_007497.1 + 1143 0.71 0.38404
Target:  5'- cUUCGCGCgGAucauGCCGGCcugcccaGCACCa -3'
miRNA:   3'- uAAGUGCGgCU----UGGCCGcaag---CGUGG- -5'
33153 5' -55.3 NC_007497.1 + 2443 0.7 0.43095
Target:  5'- ---uGCGCCGc-UgGGCGUUCGCGCg -3'
miRNA:   3'- uaagUGCGGCuuGgCCGCAAGCGUGg -5'
33153 5' -55.3 NC_007497.1 + 2908 0.71 0.349033
Target:  5'- cUUCACGgacguuCCGAACUGGCGUgauggcgggCgGCGCCa -3'
miRNA:   3'- uAAGUGC------GGCUUGGCCGCAa--------G-CGUGG- -5'
33153 5' -55.3 NC_007497.1 + 3140 0.69 0.491411
Target:  5'- -cUCGCGCuCGGacggcGCCGGCcagCGCGCUu -3'
miRNA:   3'- uaAGUGCG-GCU-----UGGCCGcaaGCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 3324 0.68 0.544627
Target:  5'- uUUCugauCGCCGuccAUCGGCGUgcggCGCuCCa -3'
miRNA:   3'- uAAGu---GCGGCu--UGGCCGCAa---GCGuGG- -5'
33153 5' -55.3 NC_007497.1 + 3542 0.74 0.232371
Target:  5'- gAUUCGCGCUGAccACCGGC-UUgGCGCg -3'
miRNA:   3'- -UAAGUGCGGCU--UGGCCGcAAgCGUGg -5'
33153 5' -55.3 NC_007497.1 + 3567 0.68 0.532739
Target:  5'- ---uGCGCCucGAGCUGGCcGUUCGCgagcaucACCg -3'
miRNA:   3'- uaagUGCGG--CUUGGCCG-CAAGCG-------UGG- -5'
33153 5' -55.3 NC_007497.1 + 3788 0.7 0.440729
Target:  5'- --gUACGCaggcgugaGAACCGGCGg-CGCAUCg -3'
miRNA:   3'- uaaGUGCGg-------CUUGGCCGCaaGCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 4024 0.68 0.544627
Target:  5'- aAUUCGCGCCGuGCCGucucggccgccGCGUccccgaaccgcUCGCguACCg -3'
miRNA:   3'- -UAAGUGCGGCuUGGC-----------CGCA-----------AGCG--UGG- -5'
33153 5' -55.3 NC_007497.1 + 4192 0.66 0.655218
Target:  5'- gAUUCGcCGCCaauuCCGGCGccaugCGCACg -3'
miRNA:   3'- -UAAGU-GCGGcuu-GGCCGCaa---GCGUGg -5'
33153 5' -55.3 NC_007497.1 + 4210 0.66 0.688422
Target:  5'- --gCGCGCCGGGuauucCCGGUccaUGCGCCg -3'
miRNA:   3'- uaaGUGCGGCUU-----GGCCGcaaGCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 4257 0.68 0.555509
Target:  5'- -aUCACGCgaUGAG-CGGCGUgugCGuCGCCg -3'
miRNA:   3'- uaAGUGCG--GCUUgGCCGCAa--GC-GUGG- -5'
33153 5' -55.3 NC_007497.1 + 4293 0.71 0.369761
Target:  5'- --cCACGCCGGgcGCUGGCGaagacguugcagcgUCGCugCa -3'
miRNA:   3'- uaaGUGCGGCU--UGGCCGCa-------------AGCGugG- -5'
33153 5' -55.3 NC_007497.1 + 4806 0.69 0.460656
Target:  5'- -gUCAUGCCGcACCucCGUUCuGCGCCu -3'
miRNA:   3'- uaAGUGCGGCuUGGccGCAAG-CGUGG- -5'
33153 5' -55.3 NC_007497.1 + 5433 0.68 0.523083
Target:  5'- --aCAUGCCGGAUguggCGGCGaacUCGaCGCCg -3'
miRNA:   3'- uaaGUGCGGCUUG----GCCGCa--AGC-GUGG- -5'
33153 5' -55.3 NC_007497.1 + 6258 0.7 0.402397
Target:  5'- --aCAUGCCGAGCCguGGCGccagcgacUCGCuACCa -3'
miRNA:   3'- uaaGUGCGGCUUGG--CCGCa-------AGCG-UGG- -5'
33153 5' -55.3 NC_007497.1 + 6867 0.74 0.251435
Target:  5'- cAUUCAUGC--GGCCGGCGUUCGaCGCg -3'
miRNA:   3'- -UAAGUGCGgcUUGGCCGCAAGC-GUGg -5'
33153 5' -55.3 NC_007497.1 + 7930 0.7 0.43095
Target:  5'- aAUUCAUGCCGAugCccgaaugggacGGCGUuaccgUCGCugUg -3'
miRNA:   3'- -UAAGUGCGGCUugG-----------CCGCA-----AGCGugG- -5'
33153 5' -55.3 NC_007497.1 + 8750 0.67 0.599576
Target:  5'- cAUUUGCGUCGAAUgCGGCGagCGUGCa -3'
miRNA:   3'- -UAAGUGCGGCUUG-GCCGCaaGCGUGg -5'
33153 5' -55.3 NC_007497.1 + 9310 0.69 0.501874
Target:  5'- --aCGCGCUGcggaauGCCGGCGcuaGUACCg -3'
miRNA:   3'- uaaGUGCGGCu-----UGGCCGCaagCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.