miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33153 5' -55.3 NC_007497.1 + 28234 0.68 0.530588
Target:  5'- --gCACGCCGAagcgaauacggacuGCCGugagcugcGUGUUCuGCACCu -3'
miRNA:   3'- uaaGUGCGGCU--------------UGGC--------CGCAAG-CGUGG- -5'
33153 5' -55.3 NC_007497.1 + 28658 0.7 0.440729
Target:  5'- -cUCGCGaccuuCGAACCGGUGaUCGUgucGCCg -3'
miRNA:   3'- uaAGUGCg----GCUUGGCCGCaAGCG---UGG- -5'
33153 5' -55.3 NC_007497.1 + 4806 0.69 0.460656
Target:  5'- -gUCAUGCCGcACCucCGUUCuGCGCCu -3'
miRNA:   3'- uaAGUGCGGCuUGGccGCAAG-CGUGG- -5'
33153 5' -55.3 NC_007497.1 + 23482 0.69 0.469778
Target:  5'- --gCGCGCUGAucaggugcacgacGCCGGCGcccgccgcCGCGCCc -3'
miRNA:   3'- uaaGUGCGGCU-------------UGGCCGCaa------GCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 3140 0.69 0.491411
Target:  5'- -cUCGCGCuCGGacggcGCCGGCcagCGCGCUu -3'
miRNA:   3'- uaAGUGCG-GCU-----UGGCCGcaaGCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 30358 0.69 0.500823
Target:  5'- cUUCGCcaGCgUGcGCCGGCGaaacaccUUCGCACCg -3'
miRNA:   3'- uAAGUG--CG-GCuUGGCCGC-------AAGCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 41243 0.69 0.501874
Target:  5'- --cCGCGCCaAGCCGGUGgUCaGCGCg -3'
miRNA:   3'- uaaGUGCGGcUUGGCCGCaAG-CGUGg -5'
33153 5' -55.3 NC_007497.1 + 29295 0.68 0.522014
Target:  5'- --cCGuCGCCGAgauagacGCCGGCGUgauUCGgaaCACCg -3'
miRNA:   3'- uaaGU-GCGGCU-------UGGCCGCA---AGC---GUGG- -5'
33153 5' -55.3 NC_007497.1 + 32866 0.68 0.523083
Target:  5'- cGUUCACGuUCGAGCUGGuCGgccucCGCGCg -3'
miRNA:   3'- -UAAGUGC-GGCUUGGCC-GCaa---GCGUGg -5'
33153 5' -55.3 NC_007497.1 + 3788 0.7 0.440729
Target:  5'- --gUACGCaggcgugaGAACCGGCGg-CGCAUCg -3'
miRNA:   3'- uaaGUGCGg-------CUUGGCCGCaaGCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 2443 0.7 0.43095
Target:  5'- ---uGCGCCGc-UgGGCGUUCGCGCg -3'
miRNA:   3'- uaagUGCGGCuuGgCCGCAAGCGUGg -5'
33153 5' -55.3 NC_007497.1 + 6258 0.7 0.402397
Target:  5'- --aCAUGCCGAGCCguGGCGccagcgacUCGCuACCa -3'
miRNA:   3'- uaaGUGCGGCUUGG--CCGCa-------AGCG-UGG- -5'
33153 5' -55.3 NC_007497.1 + 39611 0.75 0.226292
Target:  5'- -aUgGCGCCGAACgGGUGcUUCGCGgCa -3'
miRNA:   3'- uaAgUGCGGCUUGgCCGC-AAGCGUgG- -5'
33153 5' -55.3 NC_007497.1 + 15098 0.73 0.264848
Target:  5'- cUUUGCGuuGAACC-GCGUggCGCGCCg -3'
miRNA:   3'- uAAGUGCggCUUGGcCGCAa-GCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 38150 0.73 0.300908
Target:  5'- -aUCACGuUCGcGCCGGCGaccguggCGCGCCu -3'
miRNA:   3'- uaAGUGC-GGCuUGGCCGCaa-----GCGUGG- -5'
33153 5' -55.3 NC_007497.1 + 35361 0.72 0.30856
Target:  5'- cUUCGCGCUGGcGCCGGUcgcuucGUUCGCucgACCa -3'
miRNA:   3'- uAAGUGCGGCU-UGGCCG------CAAGCG---UGG- -5'
33153 5' -55.3 NC_007497.1 + 16261 0.72 0.324307
Target:  5'- --cUACGCCGAcgGCCGGCG--CGCuCCg -3'
miRNA:   3'- uaaGUGCGGCU--UGGCCGCaaGCGuGG- -5'
33153 5' -55.3 NC_007497.1 + 41161 0.71 0.349033
Target:  5'- -aUCGcCGCCGcaucgUCGGCGUUCGcCGCCc -3'
miRNA:   3'- uaAGU-GCGGCuu---GGCCGCAAGC-GUGG- -5'
33153 5' -55.3 NC_007497.1 + 1143 0.71 0.38404
Target:  5'- cUUCGCGCgGAucauGCCGGCcugcccaGCACCa -3'
miRNA:   3'- uAAGUGCGgCU----UGGCCGcaag---CGUGG- -5'
33153 5' -55.3 NC_007497.1 + 16160 0.71 0.393149
Target:  5'- -gUUGCGCUGAucCCGGCa--CGCACCg -3'
miRNA:   3'- uaAGUGCGGCUu-GGCCGcaaGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.