miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33154 5' -53.2 NC_007497.1 + 11803 0.66 0.789662
Target:  5'- aUGAgccgCGUGagCGaUGAguuccGUCGCCGACGu -3'
miRNA:   3'- -ACUa---GCACg-GCaACUa----CAGCGGCUGU- -5'
33154 5' -53.2 NC_007497.1 + 37849 0.66 0.789662
Target:  5'- cUGAUcCG-GCCGgcacucGAUGUCGCCcugGGCGa -3'
miRNA:   3'- -ACUA-GCaCGGCaa----CUACAGCGG---CUGU- -5'
33154 5' -53.2 NC_007497.1 + 5944 0.66 0.789662
Target:  5'- aUGAcgUCGUGCa---GAUGUUGCuCGACGc -3'
miRNA:   3'- -ACU--AGCACGgcaaCUACAGCG-GCUGU- -5'
33154 5' -53.2 NC_007497.1 + 21119 0.66 0.777444
Target:  5'- gGcgCGUGCCGUgcgcucaacGagGCCGACAa -3'
miRNA:   3'- aCuaGCACGGCAacua-----CagCGGCUGU- -5'
33154 5' -53.2 NC_007497.1 + 25662 0.67 0.737348
Target:  5'- aUGAUCccGuuGUUGuUGUCgacGCCGACAc -3'
miRNA:   3'- -ACUAGcaCggCAACuACAG---CGGCUGU- -5'
33154 5' -53.2 NC_007497.1 + 40260 0.67 0.704519
Target:  5'- cGAUCGUGCgGUccg-GUCGUgCGGCAc -3'
miRNA:   3'- aCUAGCACGgCAacuaCAGCG-GCUGU- -5'
33154 5' -53.2 NC_007497.1 + 30322 0.68 0.625859
Target:  5'- aGGUCGcUGUCGUUGGcccaUGUgGCCGGgAa -3'
miRNA:   3'- aCUAGC-ACGGCAACU----ACAgCGGCUgU- -5'
33154 5' -53.2 NC_007497.1 + 42606 0.7 0.536426
Target:  5'- uUGcgCGUGCCc--GGUGUCuGCCGGCu -3'
miRNA:   3'- -ACuaGCACGGcaaCUACAG-CGGCUGu -5'
33154 5' -53.2 NC_007497.1 + 19561 0.71 0.503943
Target:  5'- gGAUCGUGCauacgggaggUGUUGAcggaagUGUCGCCGcCGa -3'
miRNA:   3'- aCUAGCACG----------GCAACU------ACAGCGGCuGU- -5'
33154 5' -53.2 NC_007497.1 + 35971 0.71 0.493303
Target:  5'- cGAUcCGUGCCGUUGAgGcCGggaCCGGCGa -3'
miRNA:   3'- aCUA-GCACGGCAACUaCaGC---GGCUGU- -5'
33154 5' -53.2 NC_007497.1 + 39554 0.71 0.493303
Target:  5'- aGAUCGaugaUGCCGUccgacgUGAUGUCuGCCGccGCAc -3'
miRNA:   3'- aCUAGC----ACGGCA------ACUACAG-CGGC--UGU- -5'
33154 5' -53.2 NC_007497.1 + 8729 0.72 0.441771
Target:  5'- gUGGUCGUGCCGcUGAUGcggcauuugCGUCGAa- -3'
miRNA:   3'- -ACUAGCACGGCaACUACa--------GCGGCUgu -5'
33154 5' -53.2 NC_007497.1 + 30425 1.09 0.001246
Target:  5'- gUGAUCGUGCCGUUGAUGUCGCCGACAg -3'
miRNA:   3'- -ACUAGCACGGCAACUACAGCGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.