miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33155 3' -53.7 NC_007497.1 + 8788 0.66 0.780717
Target:  5'- cGCGCGAUCGAgG-CuGCgcGCGGGUcGCu -3'
miRNA:   3'- -UGUGCUAGCUgCaGcUGa-CGUCCA-CG- -5'
33155 3' -53.7 NC_007497.1 + 15187 0.66 0.770506
Target:  5'- gGCuCGAUCGGCGUCGACgacuGGa-- -3'
miRNA:   3'- -UGuGCUAGCUGCAGCUGacguCCacg -5'
33155 3' -53.7 NC_007497.1 + 9666 0.66 0.770506
Target:  5'- -aGCGAUCG-CGaugCGGCUGCGGcGaaacUGCa -3'
miRNA:   3'- ugUGCUAGCuGCa--GCUGACGUC-C----ACG- -5'
33155 3' -53.7 NC_007497.1 + 27990 0.66 0.770506
Target:  5'- gGCGuauCGAUCGGCGcUGA-UGCGGGcUGCu -3'
miRNA:   3'- -UGU---GCUAGCUGCaGCUgACGUCC-ACG- -5'
33155 3' -53.7 NC_007497.1 + 33087 0.66 0.768445
Target:  5'- gACGCGuagucggccagcUCGGCGUCGAuCUGCGcGcUGCg -3'
miRNA:   3'- -UGUGCu-----------AGCUGCAGCU-GACGUcC-ACG- -5'
33155 3' -53.7 NC_007497.1 + 8684 0.66 0.760147
Target:  5'- gGCugGcGUCGACGgccggCGGCUauuucaacGC-GGUGCg -3'
miRNA:   3'- -UGugC-UAGCUGCa----GCUGA--------CGuCCACG- -5'
33155 3' -53.7 NC_007497.1 + 11977 0.66 0.760147
Target:  5'- aGCGCGAUUGGCGUguUGGCgcgaGCcGG-GCg -3'
miRNA:   3'- -UGUGCUAGCUGCA--GCUGa---CGuCCaCG- -5'
33155 3' -53.7 NC_007497.1 + 11010 0.66 0.760147
Target:  5'- gGCGCGGcaGGCcggGUUGAUUGCGGG-GCg -3'
miRNA:   3'- -UGUGCUagCUG---CAGCUGACGUCCaCG- -5'
33155 3' -53.7 NC_007497.1 + 4497 0.66 0.749652
Target:  5'- aGCGCGucGUCGAaaaCGACgcuguUGUAGGUGCc -3'
miRNA:   3'- -UGUGC--UAGCUgcaGCUG-----ACGUCCACG- -5'
33155 3' -53.7 NC_007497.1 + 9640 0.66 0.737965
Target:  5'- gGCGCGccggccgCGACGUCGGCUGgcugaaaaugcuuCAGGUu- -3'
miRNA:   3'- -UGUGCua-----GCUGCAGCUGAC-------------GUCCAcg -5'
33155 3' -53.7 NC_007497.1 + 43160 0.67 0.728303
Target:  5'- uCGCGAgCGAUG-C-ACUGgAGGUGCa -3'
miRNA:   3'- uGUGCUaGCUGCaGcUGACgUCCACG- -5'
33155 3' -53.7 NC_007497.1 + 37611 0.67 0.728303
Target:  5'- cACGCGAUCGAUgaucugGUCGGCcaGCGagucggccucGGUGUa -3'
miRNA:   3'- -UGUGCUAGCUG------CAGCUGa-CGU----------CCACG- -5'
33155 3' -53.7 NC_007497.1 + 27011 0.67 0.695564
Target:  5'- cGCGCGAcugugCGACGccCGACgGCAGGaucGCc -3'
miRNA:   3'- -UGUGCUa----GCUGCa-GCUGaCGUCCa--CG- -5'
33155 3' -53.7 NC_007497.1 + 13465 0.67 0.6734
Target:  5'- gAUGCGAUCugGACGcuUCG-CUGCguaucAGGUGCa -3'
miRNA:   3'- -UGUGCUAG--CUGC--AGCuGACG-----UCCACG- -5'
33155 3' -53.7 NC_007497.1 + 8360 0.67 0.6734
Target:  5'- uGCGCGcgCaGAUGUCGGCUGCcGaGUucGCa -3'
miRNA:   3'- -UGUGCuaG-CUGCAGCUGACGuC-CA--CG- -5'
33155 3' -53.7 NC_007497.1 + 1095 0.67 0.6734
Target:  5'- aGCGCGcgCGAUGaUC-ACUGCAcGGUGa -3'
miRNA:   3'- -UGUGCuaGCUGC-AGcUGACGU-CCACg -5'
33155 3' -53.7 NC_007497.1 + 30032 0.68 0.662251
Target:  5'- gACG-GAUCGACGUCGG-UGCGcuucGUGCg -3'
miRNA:   3'- -UGUgCUAGCUGCAGCUgACGUc---CACG- -5'
33155 3' -53.7 NC_007497.1 + 16488 0.68 0.647716
Target:  5'- -uGCGGUugggaucccgcUGACGUCGgaugcgccuuggguGCgGCAGGUGCa -3'
miRNA:   3'- ugUGCUA-----------GCUGCAGC--------------UGaCGUCCACG- -5'
33155 3' -53.7 NC_007497.1 + 28429 0.68 0.633157
Target:  5'- uCugGAUCGGCGUaccgucgagguagacCGACUGCA--UGCc -3'
miRNA:   3'- uGugCUAGCUGCA---------------GCUGACGUccACG- -5'
33155 3' -53.7 NC_007497.1 + 14247 0.68 0.617475
Target:  5'- gGCACcugcaGUCGACGUCGAUcgugugGCAGG-GUc -3'
miRNA:   3'- -UGUGc----UAGCUGCAGCUGa-----CGUCCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.