miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33155 5' -58.5 NC_007497.1 + 18283 0.66 0.485009
Target:  5'- cGCGCAGaacgugaugaacgugACGUCGCUGCCGGcCGUc- -3'
miRNA:   3'- -UGCGUCg--------------UGUAGCGGCGGCUaGCGac -5'
33155 5' -58.5 NC_007497.1 + 33246 0.66 0.483987
Target:  5'- -aGCuucguGCGCuUCGCCGCCaGAUCGg-- -3'
miRNA:   3'- ugCGu----CGUGuAGCGGCGG-CUAGCgac -5'
33155 5' -58.5 NC_007497.1 + 9959 0.66 0.483987
Target:  5'- cGCGCAGgGCGagcUCGagCGuCCGAggcgUCGCUGg -3'
miRNA:   3'- -UGCGUCgUGU---AGCg-GC-GGCU----AGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 8713 0.66 0.473832
Target:  5'- aACGCGGUGCGUgaugguggucgUGCCGCUGAU-GCg- -3'
miRNA:   3'- -UGCGUCGUGUA-----------GCGGCGGCUAgCGac -5'
33155 5' -58.5 NC_007497.1 + 33048 0.66 0.473832
Target:  5'- aGCGCGGC-CAgcucUCGCgCGaCCucUCGCUGa -3'
miRNA:   3'- -UGCGUCGuGU----AGCG-GC-GGcuAGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 16077 0.66 0.473832
Target:  5'- gGCGCgGGCGCGUcuggcucaaucCGCCGuUCGGUCGUg- -3'
miRNA:   3'- -UGCG-UCGUGUA-----------GCGGC-GGCUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 33987 0.66 0.473832
Target:  5'- cUGCGGCGucCAUCGCUGCCaGcgUGCg- -3'
miRNA:   3'- uGCGUCGU--GUAGCGGCGG-CuaGCGac -5'
33155 5' -58.5 NC_007497.1 + 15512 0.66 0.473832
Target:  5'- uGCGCcGCAUAUCG-CGCagGAgCGCUGa -3'
miRNA:   3'- -UGCGuCGUGUAGCgGCGg-CUaGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 41401 0.66 0.473832
Target:  5'- cGCGCaaGGCAUAUCGCCcgcgcgcagugcGCCGcacgGCUGg -3'
miRNA:   3'- -UGCG--UCGUGUAGCGG------------CGGCuag-CGAC- -5'
33155 5' -58.5 NC_007497.1 + 35115 0.66 0.463785
Target:  5'- cUGCAGUu--UCGCCGCagccgcaucgCGAUCGCUc -3'
miRNA:   3'- uGCGUCGuguAGCGGCG----------GCUAGCGAc -5'
33155 5' -58.5 NC_007497.1 + 13897 0.66 0.463785
Target:  5'- gUGUGGCuacguCGUCGgCGUCGAUUGUUGg -3'
miRNA:   3'- uGCGUCGu----GUAGCgGCGGCUAGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 6871 0.66 0.45385
Target:  5'- cAUGCGGCcgGCGuUCGaCgCGUCGAUCGCUc -3'
miRNA:   3'- -UGCGUCG--UGU-AGC-G-GCGGCUAGCGAc -5'
33155 5' -58.5 NC_007497.1 + 35146 0.66 0.45385
Target:  5'- aGC-CAGCcgACGUCGCgGCCGG-CGCg- -3'
miRNA:   3'- -UGcGUCG--UGUAGCGgCGGCUaGCGac -5'
33155 5' -58.5 NC_007497.1 + 6241 0.66 0.444032
Target:  5'- uCGCAGCAUcgCGCCcgacauGCCGAgccguggCGCc- -3'
miRNA:   3'- uGCGUCGUGuaGCGG------CGGCUa------GCGac -5'
33155 5' -58.5 NC_007497.1 + 40060 0.66 0.444032
Target:  5'- aGCGCGGCcuGCA-CGUCGCCG--CGCUu -3'
miRNA:   3'- -UGCGUCG--UGUaGCGGCGGCuaGCGAc -5'
33155 5' -58.5 NC_007497.1 + 36448 0.66 0.443056
Target:  5'- cGCGCAGCucggcaaGCGUC-CUGCCGAgcCGCa- -3'
miRNA:   3'- -UGCGUCG-------UGUAGcGGCGGCUa-GCGac -5'
33155 5' -58.5 NC_007497.1 + 32567 0.67 0.434334
Target:  5'- cUGCGGCAgAcgCGCCaaguCCGAUCGCa- -3'
miRNA:   3'- uGCGUCGUgUa-GCGGc---GGCUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 34605 0.67 0.428575
Target:  5'- cCGCGGCACGcUCcguugcugcggccaaGCCGgCGGUCGCc- -3'
miRNA:   3'- uGCGUCGUGU-AG---------------CGGCgGCUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 481 0.67 0.424761
Target:  5'- -gGCGGCAC--CGCCGCgguUGAUCGCc- -3'
miRNA:   3'- ugCGUCGUGuaGCGGCG---GCUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 30505 0.67 0.424761
Target:  5'- gACGCAGUGCAUgCGCCaGCUGccaCGCa- -3'
miRNA:   3'- -UGCGUCGUGUA-GCGG-CGGCua-GCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.