Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33155 | 5' | -58.5 | NC_007497.1 | + | 32567 | 0.67 | 0.434334 |
Target: 5'- cUGCGGCAgAcgCGCCaaguCCGAUCGCa- -3' miRNA: 3'- uGCGUCGUgUa-GCGGc---GGCUAGCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 34651 | 0.67 | 0.414376 |
Target: 5'- gGCGCcucguucGGCGCGcUCGCgCGCCugcgucgcGAUCGCUa -3' miRNA: 3'- -UGCG-------UCGUGU-AGCG-GCGG--------CUAGCGAc -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 16437 | 0.67 | 0.405997 |
Target: 5'- aGCGCAGCAuCAUCcucuaCGCCGAauccUGCUGc -3' miRNA: 3'- -UGCGUCGU-GUAGcg---GCGGCUa---GCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 32831 | 0.67 | 0.396813 |
Target: 5'- cGCGCuGCaACGUgaGCCGCUGAUCGa-- -3' miRNA: 3'- -UGCGuCG-UGUAg-CGGCGGCUAGCgac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 215 | 0.67 | 0.387764 |
Target: 5'- cGCGguGCGCGaCGaugugaUCGCCGAUCGUg- -3' miRNA: 3'- -UGCguCGUGUaGC------GGCGGCUAGCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 4495 | 0.67 | 0.424761 |
Target: 5'- --uCAGCGCGUCGUCGaaaaCGA-CGCUGu -3' miRNA: 3'- ugcGUCGUGUAGCGGCg---GCUaGCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 13699 | 0.67 | 0.415314 |
Target: 5'- gACGCcGCAUggGUCGCCGCaCGGgcCGCa- -3' miRNA: 3'- -UGCGuCGUG--UAGCGGCG-GCUa-GCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 6871 | 0.66 | 0.45385 |
Target: 5'- cAUGCGGCcgGCGuUCGaCgCGUCGAUCGCUc -3' miRNA: 3'- -UGCGUCG--UGU-AGC-G-GCGGCUAGCGAc -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 35146 | 0.66 | 0.45385 |
Target: 5'- aGC-CAGCcgACGUCGCgGCCGG-CGCg- -3' miRNA: 3'- -UGcGUCG--UGUAGCGgCGGCUaGCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 13897 | 0.66 | 0.463785 |
Target: 5'- gUGUGGCuacguCGUCGgCGUCGAUUGUUGg -3' miRNA: 3'- uGCGUCGu----GUAGCgGCGGCUAGCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 8713 | 0.66 | 0.473832 |
Target: 5'- aACGCGGUGCGUgaugguggucgUGCCGCUGAU-GCg- -3' miRNA: 3'- -UGCGUCGUGUA-----------GCGGCGGCUAgCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 15512 | 0.66 | 0.473832 |
Target: 5'- uGCGCcGCAUAUCG-CGCagGAgCGCUGa -3' miRNA: 3'- -UGCGuCGUGUAGCgGCGg-CUaGCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 33246 | 0.66 | 0.483987 |
Target: 5'- -aGCuucguGCGCuUCGCCGCCaGAUCGg-- -3' miRNA: 3'- ugCGu----CGUGuAGCGGCGG-CUAGCgac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 33048 | 0.66 | 0.473832 |
Target: 5'- aGCGCGGC-CAgcucUCGCgCGaCCucUCGCUGa -3' miRNA: 3'- -UGCGUCGuGU----AGCG-GC-GGcuAGCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 16077 | 0.66 | 0.473832 |
Target: 5'- gGCGCgGGCGCGUcuggcucaaucCGCCGuUCGGUCGUg- -3' miRNA: 3'- -UGCG-UCGUGUA-----------GCGGC-GGCUAGCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 33987 | 0.66 | 0.473832 |
Target: 5'- cUGCGGCGucCAUCGCUGCCaGcgUGCg- -3' miRNA: 3'- uGCGUCGU--GUAGCGGCGG-CuaGCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 35115 | 0.66 | 0.463785 |
Target: 5'- cUGCAGUu--UCGCCGCagccgcaucgCGAUCGCUc -3' miRNA: 3'- uGCGUCGuguAGCGGCG----------GCUAGCGAc -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 40060 | 0.66 | 0.444032 |
Target: 5'- aGCGCGGCcuGCA-CGUCGCCG--CGCUu -3' miRNA: 3'- -UGCGUCG--UGUaGCGGCGGCuaGCGAc -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 6241 | 0.66 | 0.444032 |
Target: 5'- uCGCAGCAUcgCGCCcgacauGCCGAgccguggCGCc- -3' miRNA: 3'- uGCGUCGUGuaGCGG------CGGCUa------GCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 18283 | 0.66 | 0.485009 |
Target: 5'- cGCGCAGaacgugaugaacgugACGUCGCUGCCGGcCGUc- -3' miRNA: 3'- -UGCGUCg--------------UGUAGCGGCGGCUaGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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