miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33155 5' -58.5 NC_007497.1 + 30505 0.67 0.424761
Target:  5'- gACGCAGUGCAUgCGCCaGCUGccaCGCa- -3'
miRNA:   3'- -UGCGUCGUGUA-GCGG-CGGCua-GCGac -5'
33155 5' -58.5 NC_007497.1 + 481 0.67 0.424761
Target:  5'- -gGCGGCAC--CGCCGCgguUGAUCGCc- -3'
miRNA:   3'- ugCGUCGUGuaGCGGCG---GCUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 10185 0.67 0.424761
Target:  5'- cCGCAGCaACGgagcgUGCCGC-GGUCGCg- -3'
miRNA:   3'- uGCGUCG-UGUa----GCGGCGgCUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 13699 0.67 0.415314
Target:  5'- gACGCcGCAUggGUCGCCGCaCGGgcCGCa- -3'
miRNA:   3'- -UGCGuCGUG--UAGCGGCG-GCUa-GCGac -5'
33155 5' -58.5 NC_007497.1 + 34651 0.67 0.414376
Target:  5'- gGCGCcucguucGGCGCGcUCGCgCGCCugcgucgcGAUCGCUa -3'
miRNA:   3'- -UGCG-------UCGUGU-AGCG-GCGG--------CUAGCGAc -5'
33155 5' -58.5 NC_007497.1 + 15099 0.67 0.411572
Target:  5'- gGCGCAGCcgaGCAUgGCCGaucguaccguaugCGAgcgCGCUGg -3'
miRNA:   3'- -UGCGUCG---UGUAgCGGCg------------GCUa--GCGAC- -5'
33155 5' -58.5 NC_007497.1 + 16437 0.67 0.405997
Target:  5'- aGCGCAGCAuCAUCcucuaCGCCGAauccUGCUGc -3'
miRNA:   3'- -UGCGUCGU-GUAGcg---GCGGCUa---GCGAC- -5'
33155 5' -58.5 NC_007497.1 + 32831 0.67 0.396813
Target:  5'- cGCGCuGCaACGUgaGCCGCUGAUCGa-- -3'
miRNA:   3'- -UGCGuCG-UGUAg-CGGCGGCUAGCgac -5'
33155 5' -58.5 NC_007497.1 + 215 0.67 0.387764
Target:  5'- cGCGguGCGCGaCGaugugaUCGCCGAUCGUg- -3'
miRNA:   3'- -UGCguCGUGUaGC------GGCGGCUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 42339 0.68 0.378851
Target:  5'- cACGCAGCGCAgCaCCGCCauguuUCGCa- -3'
miRNA:   3'- -UGCGUCGUGUaGcGGCGGcu---AGCGac -5'
33155 5' -58.5 NC_007497.1 + 3807 0.68 0.378851
Target:  5'- -gGCGGCGCAUCGaUC-CC-AUCGCUGa -3'
miRNA:   3'- ugCGUCGUGUAGC-GGcGGcUAGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 4268 0.68 0.378851
Target:  5'- -aGCGGCGUGUgCGUCGCCGAUCagcacgggcgGCUGg -3'
miRNA:   3'- ugCGUCGUGUA-GCGGCGGCUAG----------CGAC- -5'
33155 5' -58.5 NC_007497.1 + 16129 0.68 0.378851
Target:  5'- gAUGCGGCGCAUgGCCGagcauggaaaCGGcguugCGCUGa -3'
miRNA:   3'- -UGCGUCGUGUAgCGGCg---------GCUa----GCGAC- -5'
33155 5' -58.5 NC_007497.1 + 27105 0.68 0.378851
Target:  5'- aGCGgAGCGgAUacgGCCGCCGAUgCGCc- -3'
miRNA:   3'- -UGCgUCGUgUAg--CGGCGGCUA-GCGac -5'
33155 5' -58.5 NC_007497.1 + 14874 0.68 0.370077
Target:  5'- uCGaaau-CGUCGCCGCCGA-CGCUGa -3'
miRNA:   3'- uGCgucguGUAGCGGCGGCUaGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 17784 0.68 0.361443
Target:  5'- gGCGUcGCACAgUCGCgCGCCGugaaGUCGgUGg -3'
miRNA:   3'- -UGCGuCGUGU-AGCG-GCGGC----UAGCgAC- -5'
33155 5' -58.5 NC_007497.1 + 24114 0.68 0.361443
Target:  5'- cUGCAacccaccccuCGCAUUGCCGCCGaAUUGCUGc -3'
miRNA:   3'- uGCGUc---------GUGUAGCGGCGGC-UAGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 34294 0.68 0.35888
Target:  5'- gGCGUAuGCAUccgcgacaucgcuuGUCGCCGCCGcUUGCg- -3'
miRNA:   3'- -UGCGU-CGUG--------------UAGCGGCGGCuAGCGac -5'
33155 5' -58.5 NC_007497.1 + 39198 0.68 0.35633
Target:  5'- cGCGCaucggcuccggauucAGCAgGcCGCCGCCGAcgCGCUu -3'
miRNA:   3'- -UGCG---------------UCGUgUaGCGGCGGCUa-GCGAc -5'
33155 5' -58.5 NC_007497.1 + 5378 0.68 0.336391
Target:  5'- uACGUAGCGgGgcaGCCGgCGA-CGCUGg -3'
miRNA:   3'- -UGCGUCGUgUag-CGGCgGCUaGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.