miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33155 5' -58.5 NC_007497.1 + 8364 0.69 0.31263
Target:  5'- cGCGCAG-AUGUCgGCUGCCGAguUCGCa- -3'
miRNA:   3'- -UGCGUCgUGUAG-CGGCGGCU--AGCGac -5'
33155 5' -58.5 NC_007497.1 + 10103 0.69 0.304997
Target:  5'- uGCGC-GCGCAggcUGCCGCUcgGAUCGCa- -3'
miRNA:   3'- -UGCGuCGUGUa--GCGGCGG--CUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 20585 0.69 0.297508
Target:  5'- aGCGUuacuGCcgugGCGUCGUCGCUGA-CGCUGa -3'
miRNA:   3'- -UGCGu---CG----UGUAGCGGCGGCUaGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 16771 0.69 0.290163
Target:  5'- gUGCGGCGCAUUa-CGCCGAaugcgcacagcUCGCUGa -3'
miRNA:   3'- uGCGUCGUGUAGcgGCGGCU-----------AGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 17677 0.69 0.290163
Target:  5'- -gGCGGCGCAUCgGCgGCCGuAUcCGCUc -3'
miRNA:   3'- ugCGUCGUGUAG-CGgCGGC-UA-GCGAc -5'
33155 5' -58.5 NC_007497.1 + 23621 0.69 0.290163
Target:  5'- -gGCAGCACGcgGCCGCCGGcCGUg- -3'
miRNA:   3'- ugCGUCGUGUagCGGCGGCUaGCGac -5'
33155 5' -58.5 NC_007497.1 + 21665 0.7 0.285824
Target:  5'- aGCGUgGGUucgccccuauugacgACGcCGCCGCUGAUCGCUGg -3'
miRNA:   3'- -UGCG-UCG---------------UGUaGCGGCGGCUAGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 39766 0.7 0.282961
Target:  5'- cCGUcgAGCACGUCcggaagGUCGCCGAgaaguUCGCUGa -3'
miRNA:   3'- uGCG--UCGUGUAG------CGGCGGCU-----AGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 23735 0.7 0.268982
Target:  5'- cUGCAGUACGcacCGCUGCCGA-CGUUGu -3'
miRNA:   3'- uGCGUCGUGUa--GCGGCGGCUaGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 44275 0.7 0.249066
Target:  5'- uACGCAGauCGUCGCCGC-GAgCGCUGa -3'
miRNA:   3'- -UGCGUCguGUAGCGGCGgCUaGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 37749 0.71 0.242703
Target:  5'- cACGUAGUACGgcgauuggGCCGCCGAacUCGCg- -3'
miRNA:   3'- -UGCGUCGUGUag------CGGCGGCU--AGCGac -5'
33155 5' -58.5 NC_007497.1 + 4956 0.71 0.224424
Target:  5'- aACGCGGCuACGUUccaGCCGCUGAgcuUCGCa- -3'
miRNA:   3'- -UGCGUCG-UGUAG---CGGCGGCU---AGCGac -5'
33155 5' -58.5 NC_007497.1 + 29291 0.71 0.212898
Target:  5'- uAUGCGGCGCAgagaaaccagaCGCaGCCGAUCGCg- -3'
miRNA:   3'- -UGCGUCGUGUa----------GCGgCGGCUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 32434 0.72 0.207328
Target:  5'- gACGUgcccGGCcccgugACGUgGCCGCCGGUCGCa- -3'
miRNA:   3'- -UGCG----UCG------UGUAgCGGCGGCUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 26020 0.72 0.196565
Target:  5'- uGCGCAGCu--UCGCCGCCag-CGCUu -3'
miRNA:   3'- -UGCGUCGuguAGCGGCGGcuaGCGAc -5'
33155 5' -58.5 NC_007497.1 + 11684 0.72 0.191368
Target:  5'- aACGCAGCGCGcagaUCGaCGCCGA--GCUGg -3'
miRNA:   3'- -UGCGUCGUGU----AGCgGCGGCUagCGAC- -5'
33155 5' -58.5 NC_007497.1 + 7297 0.72 0.181336
Target:  5'- uCGCAGCAaguUCGCCGCCcucaaGUCGCa- -3'
miRNA:   3'- uGCGUCGUgu-AGCGGCGGc----UAGCGac -5'
33155 5' -58.5 NC_007497.1 + 10821 0.74 0.145738
Target:  5'- cCGCAGCACGgggUGCUGCUGAUgGCa- -3'
miRNA:   3'- uGCGUCGUGUa--GCGGCGGCUAgCGac -5'
33155 5' -58.5 NC_007497.1 + 33435 0.74 0.141765
Target:  5'- aGCGCAgGCGCAUUGaCGCCGAUaCGCg- -3'
miRNA:   3'- -UGCGU-CGUGUAGCgGCGGCUA-GCGac -5'
33155 5' -58.5 NC_007497.1 + 35849 0.74 0.134115
Target:  5'- uGCGCAGCACGUCGuCCuGCgCGAcCGCa- -3'
miRNA:   3'- -UGCGUCGUGUAGC-GG-CG-GCUaGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.