Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33155 | 5' | -58.5 | NC_007497.1 | + | 15099 | 0.67 | 0.411572 |
Target: 5'- gGCGCAGCcgaGCAUgGCCGaucguaccguaugCGAgcgCGCUGg -3' miRNA: 3'- -UGCGUCG---UGUAgCGGCg------------GCUa--GCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 15512 | 0.66 | 0.473832 |
Target: 5'- uGCGCcGCAUAUCG-CGCagGAgCGCUGa -3' miRNA: 3'- -UGCGuCGUGUAGCgGCGg-CUaGCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 16077 | 0.66 | 0.473832 |
Target: 5'- gGCGCgGGCGCGUcuggcucaaucCGCCGuUCGGUCGUg- -3' miRNA: 3'- -UGCG-UCGUGUA-----------GCGGC-GGCUAGCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 16129 | 0.68 | 0.378851 |
Target: 5'- gAUGCGGCGCAUgGCCGagcauggaaaCGGcguugCGCUGa -3' miRNA: 3'- -UGCGUCGUGUAgCGGCg---------GCUa----GCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 16437 | 0.67 | 0.405997 |
Target: 5'- aGCGCAGCAuCAUCcucuaCGCCGAauccUGCUGc -3' miRNA: 3'- -UGCGUCGU-GUAGcg---GCGGCUa---GCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 16771 | 0.69 | 0.290163 |
Target: 5'- gUGCGGCGCAUUa-CGCCGAaugcgcacagcUCGCUGa -3' miRNA: 3'- uGCGUCGUGUAGcgGCGGCU-----------AGCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 17677 | 0.69 | 0.290163 |
Target: 5'- -gGCGGCGCAUCgGCgGCCGuAUcCGCUc -3' miRNA: 3'- ugCGUCGUGUAG-CGgCGGC-UA-GCGAc -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 17784 | 0.68 | 0.361443 |
Target: 5'- gGCGUcGCACAgUCGCgCGCCGugaaGUCGgUGg -3' miRNA: 3'- -UGCGuCGUGU-AGCG-GCGGC----UAGCgAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 18283 | 0.66 | 0.485009 |
Target: 5'- cGCGCAGaacgugaugaacgugACGUCGCUGCCGGcCGUc- -3' miRNA: 3'- -UGCGUCg--------------UGUAGCGGCGGCUaGCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 20585 | 0.69 | 0.297508 |
Target: 5'- aGCGUuacuGCcgugGCGUCGUCGCUGA-CGCUGa -3' miRNA: 3'- -UGCGu---CG----UGUAGCGGCGGCUaGCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 21665 | 0.7 | 0.285824 |
Target: 5'- aGCGUgGGUucgccccuauugacgACGcCGCCGCUGAUCGCUGg -3' miRNA: 3'- -UGCG-UCG---------------UGUaGCGGCGGCUAGCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 23621 | 0.69 | 0.290163 |
Target: 5'- -gGCAGCACGcgGCCGCCGGcCGUg- -3' miRNA: 3'- ugCGUCGUGUagCGGCGGCUaGCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 23735 | 0.7 | 0.268982 |
Target: 5'- cUGCAGUACGcacCGCUGCCGA-CGUUGu -3' miRNA: 3'- uGCGUCGUGUa--GCGGCGGCUaGCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 24114 | 0.68 | 0.361443 |
Target: 5'- cUGCAacccaccccuCGCAUUGCCGCCGaAUUGCUGc -3' miRNA: 3'- uGCGUc---------GUGUAGCGGCGGC-UAGCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 26020 | 0.72 | 0.196565 |
Target: 5'- uGCGCAGCu--UCGCCGCCag-CGCUu -3' miRNA: 3'- -UGCGUCGuguAGCGGCGGcuaGCGAc -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 27105 | 0.68 | 0.378851 |
Target: 5'- aGCGgAGCGgAUacgGCCGCCGAUgCGCc- -3' miRNA: 3'- -UGCgUCGUgUAg--CGGCGGCUA-GCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 29291 | 0.71 | 0.212898 |
Target: 5'- uAUGCGGCGCAgagaaaccagaCGCaGCCGAUCGCg- -3' miRNA: 3'- -UGCGUCGUGUa----------GCGgCGGCUAGCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 30505 | 0.67 | 0.424761 |
Target: 5'- gACGCAGUGCAUgCGCCaGCUGccaCGCa- -3' miRNA: 3'- -UGCGUCGUGUA-GCGG-CGGCua-GCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 30573 | 1.07 | 0.000477 |
Target: 5'- aACGCAGCACAUCGCCGCCGAUCGCUGu -3' miRNA: 3'- -UGCGUCGUGUAGCGGCGGCUAGCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 32434 | 0.72 | 0.207328 |
Target: 5'- gACGUgcccGGCcccgugACGUgGCCGCCGGUCGCa- -3' miRNA: 3'- -UGCG----UCG------UGUAgCGGCGGCUAGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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