miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33155 5' -58.5 NC_007497.1 + 32567 0.67 0.434334
Target:  5'- cUGCGGCAgAcgCGCCaaguCCGAUCGCa- -3'
miRNA:   3'- uGCGUCGUgUa-GCGGc---GGCUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 32831 0.67 0.396813
Target:  5'- cGCGCuGCaACGUgaGCCGCUGAUCGa-- -3'
miRNA:   3'- -UGCGuCG-UGUAg-CGGCGGCUAGCgac -5'
33155 5' -58.5 NC_007497.1 + 33048 0.66 0.473832
Target:  5'- aGCGCGGC-CAgcucUCGCgCGaCCucUCGCUGa -3'
miRNA:   3'- -UGCGUCGuGU----AGCG-GC-GGcuAGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 33246 0.66 0.483987
Target:  5'- -aGCuucguGCGCuUCGCCGCCaGAUCGg-- -3'
miRNA:   3'- ugCGu----CGUGuAGCGGCGG-CUAGCgac -5'
33155 5' -58.5 NC_007497.1 + 33435 0.74 0.141765
Target:  5'- aGCGCAgGCGCAUUGaCGCCGAUaCGCg- -3'
miRNA:   3'- -UGCGU-CGUGUAGCgGCGGCUA-GCGac -5'
33155 5' -58.5 NC_007497.1 + 33987 0.66 0.473832
Target:  5'- cUGCGGCGucCAUCGCUGCCaGcgUGCg- -3'
miRNA:   3'- uGCGUCGU--GUAGCGGCGG-CuaGCGac -5'
33155 5' -58.5 NC_007497.1 + 34294 0.68 0.35888
Target:  5'- gGCGUAuGCAUccgcgacaucgcuuGUCGCCGCCGcUUGCg- -3'
miRNA:   3'- -UGCGU-CGUG--------------UAGCGGCGGCuAGCGac -5'
33155 5' -58.5 NC_007497.1 + 34605 0.67 0.428575
Target:  5'- cCGCGGCACGcUCcguugcugcggccaaGCCGgCGGUCGCc- -3'
miRNA:   3'- uGCGUCGUGU-AG---------------CGGCgGCUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 34651 0.67 0.414376
Target:  5'- gGCGCcucguucGGCGCGcUCGCgCGCCugcgucgcGAUCGCUa -3'
miRNA:   3'- -UGCG-------UCGUGU-AGCG-GCGG--------CUAGCGAc -5'
33155 5' -58.5 NC_007497.1 + 35115 0.66 0.463785
Target:  5'- cUGCAGUu--UCGCCGCagccgcaucgCGAUCGCUc -3'
miRNA:   3'- uGCGUCGuguAGCGGCG----------GCUAGCGAc -5'
33155 5' -58.5 NC_007497.1 + 35146 0.66 0.45385
Target:  5'- aGC-CAGCcgACGUCGCgGCCGG-CGCg- -3'
miRNA:   3'- -UGcGUCG--UGUAGCGgCGGCUaGCGac -5'
33155 5' -58.5 NC_007497.1 + 35849 0.74 0.134115
Target:  5'- uGCGCAGCACGUCGuCCuGCgCGAcCGCa- -3'
miRNA:   3'- -UGCGUCGUGUAGC-GG-CG-GCUaGCGac -5'
33155 5' -58.5 NC_007497.1 + 36168 0.77 0.093012
Target:  5'- gGCGgGGCGCGUCgGCCGcCCGGUCGUg- -3'
miRNA:   3'- -UGCgUCGUGUAG-CGGC-GGCUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 36448 0.66 0.443056
Target:  5'- cGCGCAGCucggcaaGCGUC-CUGCCGAgcCGCa- -3'
miRNA:   3'- -UGCGUCG-------UGUAGcGGCGGCUa-GCGac -5'
33155 5' -58.5 NC_007497.1 + 37749 0.71 0.242703
Target:  5'- cACGUAGUACGgcgauuggGCCGCCGAacUCGCg- -3'
miRNA:   3'- -UGCGUCGUGUag------CGGCGGCU--AGCGac -5'
33155 5' -58.5 NC_007497.1 + 39198 0.68 0.35633
Target:  5'- cGCGCaucggcuccggauucAGCAgGcCGCCGCCGAcgCGCUu -3'
miRNA:   3'- -UGCG---------------UCGUgUaGCGGCGGCUa-GCGAc -5'
33155 5' -58.5 NC_007497.1 + 39766 0.7 0.282961
Target:  5'- cCGUcgAGCACGUCcggaagGUCGCCGAgaaguUCGCUGa -3'
miRNA:   3'- uGCG--UCGUGUAG------CGGCGGCU-----AGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 40060 0.66 0.444032
Target:  5'- aGCGCGGCcuGCA-CGUCGCCG--CGCUu -3'
miRNA:   3'- -UGCGUCG--UGUaGCGGCGGCuaGCGAc -5'
33155 5' -58.5 NC_007497.1 + 40231 0.67 0.424761
Target:  5'- gACGCGGCGC-UCGuuGCaugggcgaagguCGAUCGUg- -3'
miRNA:   3'- -UGCGUCGUGuAGCggCG------------GCUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 41401 0.66 0.473832
Target:  5'- cGCGCaaGGCAUAUCGCCcgcgcgcagugcGCCGcacgGCUGg -3'
miRNA:   3'- -UGCG--UCGUGUAGCGG------------CGGCuag-CGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.