miRNA display CGI


Results 41 - 60 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33155 5' -58.5 NC_007497.1 + 16077 0.66 0.473832
Target:  5'- gGCGCgGGCGCGUcuggcucaaucCGCCGuUCGGUCGUg- -3'
miRNA:   3'- -UGCG-UCGUGUA-----------GCGGC-GGCUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 15512 0.66 0.473832
Target:  5'- uGCGCcGCAUAUCG-CGCagGAgCGCUGa -3'
miRNA:   3'- -UGCGuCGUGUAGCgGCGg-CUaGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 15099 0.67 0.411572
Target:  5'- gGCGCAGCcgaGCAUgGCCGaucguaccguaugCGAgcgCGCUGg -3'
miRNA:   3'- -UGCGUCG---UGUAgCGGCg------------GCUa--GCGAC- -5'
33155 5' -58.5 NC_007497.1 + 14874 0.68 0.370077
Target:  5'- uCGaaau-CGUCGCCGCCGA-CGCUGa -3'
miRNA:   3'- uGCgucguGUAGCGGCGGCUaGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 13897 0.66 0.463785
Target:  5'- gUGUGGCuacguCGUCGgCGUCGAUUGUUGg -3'
miRNA:   3'- uGCGUCGu----GUAGCgGCGGCUAGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 13699 0.67 0.415314
Target:  5'- gACGCcGCAUggGUCGCCGCaCGGgcCGCa- -3'
miRNA:   3'- -UGCGuCGUG--UAGCGGCG-GCUa-GCGac -5'
33155 5' -58.5 NC_007497.1 + 11684 0.72 0.191368
Target:  5'- aACGCAGCGCGcagaUCGaCGCCGA--GCUGg -3'
miRNA:   3'- -UGCGUCGUGU----AGCgGCGGCUagCGAC- -5'
33155 5' -58.5 NC_007497.1 + 10821 0.74 0.145738
Target:  5'- cCGCAGCACGgggUGCUGCUGAUgGCa- -3'
miRNA:   3'- uGCGUCGUGUa--GCGGCGGCUAgCGac -5'
33155 5' -58.5 NC_007497.1 + 10185 0.67 0.424761
Target:  5'- cCGCAGCaACGgagcgUGCCGC-GGUCGCg- -3'
miRNA:   3'- uGCGUCG-UGUa----GCGGCGgCUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 10103 0.69 0.304997
Target:  5'- uGCGC-GCGCAggcUGCCGCUcgGAUCGCa- -3'
miRNA:   3'- -UGCGuCGUGUa--GCGGCGG--CUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 9959 0.66 0.483987
Target:  5'- cGCGCAGgGCGagcUCGagCGuCCGAggcgUCGCUGg -3'
miRNA:   3'- -UGCGUCgUGU---AGCg-GC-GGCU----AGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 8713 0.66 0.473832
Target:  5'- aACGCGGUGCGUgaugguggucgUGCCGCUGAU-GCg- -3'
miRNA:   3'- -UGCGUCGUGUA-----------GCGGCGGCUAgCGac -5'
33155 5' -58.5 NC_007497.1 + 8364 0.69 0.31263
Target:  5'- cGCGCAG-AUGUCgGCUGCCGAguUCGCa- -3'
miRNA:   3'- -UGCGUCgUGUAG-CGGCGGCU--AGCGac -5'
33155 5' -58.5 NC_007497.1 + 7297 0.72 0.181336
Target:  5'- uCGCAGCAaguUCGCCGCCcucaaGUCGCa- -3'
miRNA:   3'- uGCGUCGUgu-AGCGGCGGc----UAGCGac -5'
33155 5' -58.5 NC_007497.1 + 6871 0.66 0.45385
Target:  5'- cAUGCGGCcgGCGuUCGaCgCGUCGAUCGCUc -3'
miRNA:   3'- -UGCGUCG--UGU-AGC-G-GCGGCUAGCGAc -5'
33155 5' -58.5 NC_007497.1 + 6241 0.66 0.444032
Target:  5'- uCGCAGCAUcgCGCCcgacauGCCGAgccguggCGCc- -3'
miRNA:   3'- uGCGUCGUGuaGCGG------CGGCUa------GCGac -5'
33155 5' -58.5 NC_007497.1 + 5378 0.68 0.336391
Target:  5'- uACGUAGCGgGgcaGCCGgCGA-CGCUGg -3'
miRNA:   3'- -UGCGUCGUgUag-CGGCgGCUaGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 4956 0.71 0.224424
Target:  5'- aACGCGGCuACGUUccaGCCGCUGAgcuUCGCa- -3'
miRNA:   3'- -UGCGUCG-UGUAG---CGGCGGCU---AGCGac -5'
33155 5' -58.5 NC_007497.1 + 4495 0.67 0.424761
Target:  5'- --uCAGCGCGUCGUCGaaaaCGA-CGCUGu -3'
miRNA:   3'- ugcGUCGUGUAGCGGCg---GCUaGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 4268 0.68 0.378851
Target:  5'- -aGCGGCGUGUgCGUCGCCGAUCagcacgggcgGCUGg -3'
miRNA:   3'- ugCGUCGUGUA-GCGGCGGCUAG----------CGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.