Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33155 | 5' | -58.5 | NC_007497.1 | + | 35849 | 0.74 | 0.134115 |
Target: 5'- uGCGCAGCACGUCGuCCuGCgCGAcCGCa- -3' miRNA: 3'- -UGCGUCGUGUAGC-GG-CG-GCUaGCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 33435 | 0.74 | 0.141765 |
Target: 5'- aGCGCAgGCGCAUUGaCGCCGAUaCGCg- -3' miRNA: 3'- -UGCGU-CGUGUAGCgGCGGCUA-GCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 7297 | 0.72 | 0.181336 |
Target: 5'- uCGCAGCAaguUCGCCGCCcucaaGUCGCa- -3' miRNA: 3'- uGCGUCGUgu-AGCGGCGGc----UAGCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 32434 | 0.72 | 0.207328 |
Target: 5'- gACGUgcccGGCcccgugACGUgGCCGCCGGUCGCa- -3' miRNA: 3'- -UGCG----UCG------UGUAgCGGCGGCUAGCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 37749 | 0.71 | 0.242703 |
Target: 5'- cACGUAGUACGgcgauuggGCCGCCGAacUCGCg- -3' miRNA: 3'- -UGCGUCGUGUag------CGGCGGCU--AGCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 23735 | 0.7 | 0.268982 |
Target: 5'- cUGCAGUACGcacCGCUGCCGA-CGUUGu -3' miRNA: 3'- uGCGUCGUGUa--GCGGCGGCUaGCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 21665 | 0.7 | 0.285824 |
Target: 5'- aGCGUgGGUucgccccuauugacgACGcCGCCGCUGAUCGCUGg -3' miRNA: 3'- -UGCG-UCG---------------UGUaGCGGCGGCUAGCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 23621 | 0.69 | 0.290163 |
Target: 5'- -gGCAGCACGcgGCCGCCGGcCGUg- -3' miRNA: 3'- ugCGUCGUGUagCGGCGGCUaGCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 16129 | 0.68 | 0.378851 |
Target: 5'- gAUGCGGCGCAUgGCCGagcauggaaaCGGcguugCGCUGa -3' miRNA: 3'- -UGCGUCGUGUAgCGGCg---------GCUa----GCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 3807 | 0.68 | 0.378851 |
Target: 5'- -gGCGGCGCAUCGaUC-CC-AUCGCUGa -3' miRNA: 3'- ugCGUCGUGUAGC-GGcGGcUAGCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 42339 | 0.68 | 0.378851 |
Target: 5'- cACGCAGCGCAgCaCCGCCauguuUCGCa- -3' miRNA: 3'- -UGCGUCGUGUaGcGGCGGcu---AGCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 14874 | 0.68 | 0.370077 |
Target: 5'- uCGaaau-CGUCGCCGCCGA-CGCUGa -3' miRNA: 3'- uGCgucguGUAGCGGCGGCUaGCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 34294 | 0.68 | 0.35888 |
Target: 5'- gGCGUAuGCAUccgcgacaucgcuuGUCGCCGCCGcUUGCg- -3' miRNA: 3'- -UGCGU-CGUG--------------UAGCGGCGGCuAGCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 39198 | 0.68 | 0.35633 |
Target: 5'- cGCGCaucggcuccggauucAGCAgGcCGCCGCCGAcgCGCUu -3' miRNA: 3'- -UGCG---------------UCGUgUaGCGGCGGCUa-GCGAc -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 10103 | 0.69 | 0.304997 |
Target: 5'- uGCGC-GCGCAggcUGCCGCUcgGAUCGCa- -3' miRNA: 3'- -UGCGuCGUGUa--GCGGCGG--CUAGCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 18283 | 0.66 | 0.485009 |
Target: 5'- cGCGCAGaacgugaugaacgugACGUCGCUGCCGGcCGUc- -3' miRNA: 3'- -UGCGUCg--------------UGUAGCGGCGGCUaGCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 42329 | 0.75 | 0.126847 |
Target: 5'- uGCGCgugauGGCGCGUCGCCGCgCGAaCGCc- -3' miRNA: 3'- -UGCG-----UCGUGUAGCGGCG-GCUaGCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 10821 | 0.74 | 0.145738 |
Target: 5'- cCGCAGCACGgggUGCUGCUGAUgGCa- -3' miRNA: 3'- uGCGUCGUGUa--GCGGCGGCUAgCGac -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 11684 | 0.72 | 0.191368 |
Target: 5'- aACGCAGCGCGcagaUCGaCGCCGA--GCUGg -3' miRNA: 3'- -UGCGUCGUGU----AGCgGCGGCUagCGAC- -5' |
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33155 | 5' | -58.5 | NC_007497.1 | + | 26020 | 0.72 | 0.196565 |
Target: 5'- uGCGCAGCu--UCGCCGCCag-CGCUu -3' miRNA: 3'- -UGCGUCGuguAGCGGCGGcuaGCGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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