miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33155 5' -58.5 NC_007497.1 + 40231 0.67 0.424761
Target:  5'- gACGCGGCGC-UCGuuGCaugggcgaagguCGAUCGUg- -3'
miRNA:   3'- -UGCGUCGUGuAGCggCG------------GCUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 10185 0.67 0.424761
Target:  5'- cCGCAGCaACGgagcgUGCCGC-GGUCGCg- -3'
miRNA:   3'- uGCGUCG-UGUa----GCGGCGgCUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 6871 0.66 0.45385
Target:  5'- cAUGCGGCcgGCGuUCGaCgCGUCGAUCGCUc -3'
miRNA:   3'- -UGCGUCG--UGU-AGC-G-GCGGCUAGCGAc -5'
33155 5' -58.5 NC_007497.1 + 35146 0.66 0.45385
Target:  5'- aGC-CAGCcgACGUCGCgGCCGG-CGCg- -3'
miRNA:   3'- -UGcGUCG--UGUAGCGgCGGCUaGCGac -5'
33155 5' -58.5 NC_007497.1 + 13897 0.66 0.463785
Target:  5'- gUGUGGCuacguCGUCGgCGUCGAUUGUUGg -3'
miRNA:   3'- uGCGUCGu----GUAGCgGCGGCUAGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 8713 0.66 0.473832
Target:  5'- aACGCGGUGCGUgaugguggucgUGCCGCUGAU-GCg- -3'
miRNA:   3'- -UGCGUCGUGUA-----------GCGGCGGCUAgCGac -5'
33155 5' -58.5 NC_007497.1 + 41401 0.66 0.473832
Target:  5'- cGCGCaaGGCAUAUCGCCcgcgcgcagugcGCCGcacgGCUGg -3'
miRNA:   3'- -UGCG--UCGUGUAGCGG------------CGGCuag-CGAC- -5'
33155 5' -58.5 NC_007497.1 + 5378 0.68 0.336391
Target:  5'- uACGUAGCGgGgcaGCCGgCGA-CGCUGg -3'
miRNA:   3'- -UGCGUCGUgUag-CGGCgGCUaGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 8364 0.69 0.31263
Target:  5'- cGCGCAG-AUGUCgGCUGCCGAguUCGCa- -3'
miRNA:   3'- -UGCGUCgUGUAG-CGGCGGCU--AGCGac -5'
33155 5' -58.5 NC_007497.1 + 42329 0.75 0.126847
Target:  5'- uGCGCgugauGGCGCGUCGCCGCgCGAaCGCc- -3'
miRNA:   3'- -UGCG-----UCGUGUAGCGGCG-GCUaGCGac -5'
33155 5' -58.5 NC_007497.1 + 10821 0.74 0.145738
Target:  5'- cCGCAGCACGgggUGCUGCUGAUgGCa- -3'
miRNA:   3'- uGCGUCGUGUa--GCGGCGGCUAgCGac -5'
33155 5' -58.5 NC_007497.1 + 11684 0.72 0.191368
Target:  5'- aACGCAGCGCGcagaUCGaCGCCGA--GCUGg -3'
miRNA:   3'- -UGCGUCGUGU----AGCgGCGGCUagCGAC- -5'
33155 5' -58.5 NC_007497.1 + 26020 0.72 0.196565
Target:  5'- uGCGCAGCu--UCGCCGCCag-CGCUu -3'
miRNA:   3'- -UGCGUCGuguAGCGGCGGcuaGCGAc -5'
33155 5' -58.5 NC_007497.1 + 29291 0.71 0.212898
Target:  5'- uAUGCGGCGCAgagaaaccagaCGCaGCCGAUCGCg- -3'
miRNA:   3'- -UGCGUCGUGUa----------GCGgCGGCUAGCGac -5'
33155 5' -58.5 NC_007497.1 + 4956 0.71 0.224424
Target:  5'- aACGCGGCuACGUUccaGCCGCUGAgcuUCGCa- -3'
miRNA:   3'- -UGCGUCG-UGUAG---CGGCGGCU---AGCGac -5'
33155 5' -58.5 NC_007497.1 + 44275 0.7 0.249066
Target:  5'- uACGCAGauCGUCGCCGC-GAgCGCUGa -3'
miRNA:   3'- -UGCGUCguGUAGCGGCGgCUaGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 39766 0.7 0.282961
Target:  5'- cCGUcgAGCACGUCcggaagGUCGCCGAgaaguUCGCUGa -3'
miRNA:   3'- uGCG--UCGUGUAG------CGGCGGCU-----AGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 16771 0.69 0.290163
Target:  5'- gUGCGGCGCAUUa-CGCCGAaugcgcacagcUCGCUGa -3'
miRNA:   3'- uGCGUCGUGUAGcgGCGGCU-----------AGCGAC- -5'
33155 5' -58.5 NC_007497.1 + 17677 0.69 0.290163
Target:  5'- -gGCGGCGCAUCgGCgGCCGuAUcCGCUc -3'
miRNA:   3'- ugCGUCGUGUAG-CGgCGGC-UA-GCGAc -5'
33155 5' -58.5 NC_007497.1 + 20585 0.69 0.297508
Target:  5'- aGCGUuacuGCcgugGCGUCGUCGCUGA-CGCUGa -3'
miRNA:   3'- -UGCGu---CG----UGUAGCGGCGGCUaGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.