Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 33157 | 5' | -57.9 | NC_007497.1 | + | 11085 | 0.66 | 0.490476 |
|
Target: 5'- uGCGaAGGCGGaAGCCGGCGca--CGUCg -3' miRNA: 3'- uUGC-UCUGUC-UCGGCCGCacacGCAG- -5' |
|||||||
| 33157 | 5' | -57.9 | NC_007497.1 | + | 29301 | 0.69 | 0.340367 |
|
Target: 5'- -cCGAGAUAGAcGCCGGCGUGauuCGg- -3' miRNA: 3'- uuGCUCUGUCU-CGGCCGCACac-GCag -5' |
|||||||
| 33157 | 5' | -57.9 | NC_007497.1 | + | 39950 | 0.69 | 0.324097 |
|
Target: 5'- gGACGcGGCAGAGCUGGCGcaucgGCGa- -3' miRNA: 3'- -UUGCuCUGUCUCGGCCGCaca--CGCag -5' |
|||||||
| 33157 | 5' | -57.9 | NC_007497.1 | + | 43333 | 0.7 | 0.293314 |
|
Target: 5'- -cCGAGACGGAGCaCGGCGUGca-GaUCg -3' miRNA: 3'- uuGCUCUGUCUCG-GCCGCACacgC-AG- -5' |
|||||||
| 33157 | 5' | -57.9 | NC_007497.1 | + | 21291 | 0.7 | 0.278799 |
|
Target: 5'- cGCGGcGGCGGGcGCCGGCGUcGUGCa-- -3' miRNA: 3'- uUGCU-CUGUCU-CGGCCGCA-CACGcag -5' |
|||||||
| 33157 | 5' | -57.9 | NC_007497.1 | + | 4259 | 0.73 | 0.187677 |
|
Target: 5'- cACGcGAU-GAG-CGGCGUGUGCGUCg -3' miRNA: 3'- uUGCuCUGuCUCgGCCGCACACGCAG- -5' |
|||||||
| 33157 | 5' | -57.9 | NC_007497.1 | + | 31847 | 1.08 | 0.000454 |
|
Target: 5'- gAACGAGACAGAGCCGGCGUGUGCGUCa -3' miRNA: 3'- -UUGCUCUGUCUCGGCCGCACACGCAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home