miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33158 3' -58.7 NC_007497.1 + 9739 0.66 0.472145
Target:  5'- cCGGCaUGCGCGCgaUGCGcGaaaGCCUcgCGa -3'
miRNA:   3'- -GCCG-ACGCGCG--ACGCaCa--UGGGuaGC- -5'
33158 3' -58.7 NC_007497.1 + 33021 0.66 0.452338
Target:  5'- -aGCU-CGCGC-GCGuUGUcGCCCAUCGa -3'
miRNA:   3'- gcCGAcGCGCGaCGC-ACA-UGGGUAGC- -5'
33158 3' -58.7 NC_007497.1 + 2793 0.66 0.442606
Target:  5'- cCGGC-GCGCGagguguuucacCUGCGUG-ACUUGUCGa -3'
miRNA:   3'- -GCCGaCGCGC-----------GACGCACaUGGGUAGC- -5'
33158 3' -58.7 NC_007497.1 + 12793 0.67 0.423503
Target:  5'- uGGCgauaCGaCGCUGCGUGUGCgCAaggccggguUCGg -3'
miRNA:   3'- gCCGac--GC-GCGACGCACAUGgGU---------AGC- -5'
33158 3' -58.7 NC_007497.1 + 43117 0.67 0.414139
Target:  5'- aCGGacggGUGCGCccaaGCGUGcGCCCAUgCGa -3'
miRNA:   3'- -GCCga--CGCGCGa---CGCACaUGGGUA-GC- -5'
33158 3' -58.7 NC_007497.1 + 29704 0.67 0.414139
Target:  5'- uCGGCUGCGcCGUgccguucggaUGCGaaUGCaCCAUCGc -3'
miRNA:   3'- -GCCGACGC-GCG----------ACGCacAUG-GGUAGC- -5'
33158 3' -58.7 NC_007497.1 + 33105 0.67 0.413209
Target:  5'- uCGGCgucgaucUGCGCGCUGCGUuccuucaGCUUAUUGa -3'
miRNA:   3'- -GCCG-------ACGCGCGACGCAca-----UGGGUAGC- -5'
33158 3' -58.7 NC_007497.1 + 27529 0.68 0.360728
Target:  5'- aGGCUuucgaGCGUGCUGCGc-UGCUCGUCc -3'
miRNA:   3'- gCCGA-----CGCGCGACGCacAUGGGUAGc -5'
33158 3' -58.7 NC_007497.1 + 40662 0.68 0.344023
Target:  5'- uGGCaauagGUGCGCUGuCGagcuUGCCCGUCGc -3'
miRNA:   3'- gCCGa----CGCGCGAC-GCac--AUGGGUAGC- -5'
33158 3' -58.7 NC_007497.1 + 3135 0.68 0.344023
Target:  5'- aGGUcGCGCGCaUGUacgGUGUGCCgCGUCc -3'
miRNA:   3'- gCCGaCGCGCG-ACG---CACAUGG-GUAGc -5'
33158 3' -58.7 NC_007497.1 + 35160 0.68 0.344023
Target:  5'- gCGGCcgGCGCGCcGgGUGUGaagCAUCGa -3'
miRNA:   3'- -GCCGa-CGCGCGaCgCACAUgg-GUAGC- -5'
33158 3' -58.7 NC_007497.1 + 16669 0.71 0.224711
Target:  5'- cCGGgaGCGCGCcgcucGCGUG-ACCgCGUCGc -3'
miRNA:   3'- -GCCgaCGCGCGa----CGCACaUGG-GUAGC- -5'
33158 3' -58.7 NC_007497.1 + 21547 0.72 0.21325
Target:  5'- cCGGCUGCG-GCagagGCGUGggcgcaGCUCGUCGa -3'
miRNA:   3'- -GCCGACGCgCGa---CGCACa-----UGGGUAGC- -5'
33158 3' -58.7 NC_007497.1 + 16571 0.72 0.202296
Target:  5'- uCGGCgUGCcuGCGCUGCagaagaGUG-ACCCGUCGu -3'
miRNA:   3'- -GCCG-ACG--CGCGACG------CACaUGGGUAGC- -5'
33158 3' -58.7 NC_007497.1 + 11357 0.72 0.186782
Target:  5'- uCGGCgucaaUGCGC-CUGCGcugGCCCAUCGg -3'
miRNA:   3'- -GCCG-----ACGCGcGACGCacaUGGGUAGC- -5'
33158 3' -58.7 NC_007497.1 + 2455 0.74 0.154609
Target:  5'- uGGCggUGCuGCGCUGCGUG-ACCCugaucUCGg -3'
miRNA:   3'- gCCG--ACG-CGCGACGCACaUGGGu----AGC- -5'
33158 3' -58.7 NC_007497.1 + 26335 0.74 0.14203
Target:  5'- cCGGCUGUaccagaucucgguGCGCUGCGUGUcGCCUGcCGa -3'
miRNA:   3'- -GCCGACG-------------CGCGACGCACA-UGGGUaGC- -5'
33158 3' -58.7 NC_007497.1 + 31955 1.08 0.000456
Target:  5'- uCGGCUGCGCGCUGCGUGUACCCAUCGc -3'
miRNA:   3'- -GCCGACGCGCGACGCACAUGGGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.