miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33158 5' -56.2 NC_007497.1 + 34653 0.66 0.604339
Target:  5'- cGCCUcguucgGCGCGCucGCGCGccuGCGUCGc-- -3'
miRNA:   3'- cCGGAa-----CGCGUG--UGCGU---CGCAGCaua -5'
33158 5' -56.2 NC_007497.1 + 44227 0.67 0.527194
Target:  5'- cGCUgggUGCGCACugucguCGCAGCaGUUGUc- -3'
miRNA:   3'- cCGGa--ACGCGUGu-----GCGUCG-CAGCAua -5'
33158 5' -56.2 NC_007497.1 + 44737 0.67 0.516443
Target:  5'- cGCaa--CGCACAUGCAGCGUUGa-- -3'
miRNA:   3'- cCGgaacGCGUGUGCGUCGCAGCaua -5'
33158 5' -56.2 NC_007497.1 + 33472 0.67 0.516443
Target:  5'- cGGCCgacUGCGC-CAuCGUGuCGUCGUAUg -3'
miRNA:   3'- -CCGGa--ACGCGuGU-GCGUcGCAGCAUA- -5'
33158 5' -56.2 NC_007497.1 + 31087 0.67 0.505782
Target:  5'- cGGCCcgUGCgGCGaccCAUGCGGCGUccCGUGc -3'
miRNA:   3'- -CCGGa-ACG-CGU---GUGCGUCGCA--GCAUa -5'
33158 5' -56.2 NC_007497.1 + 38614 0.67 0.505782
Target:  5'- cGGCCgcaacaGCGCACGCGCguuaAGCGgcaGUu- -3'
miRNA:   3'- -CCGGaa----CGCGUGUGCG----UCGCag-CAua -5'
33158 5' -56.2 NC_007497.1 + 39221 0.68 0.474392
Target:  5'- aGGCCgc-CGCcgACGCGCuuCGUCGUGUa -3'
miRNA:   3'- -CCGGaacGCG--UGUGCGucGCAGCAUA- -5'
33158 5' -56.2 NC_007497.1 + 42250 0.68 0.474392
Target:  5'- cGGCCgccgGCGCGCACGCccgGGCagaaGUGg -3'
miRNA:   3'- -CCGGaa--CGCGUGUGCG---UCGcag-CAUa -5'
33158 5' -56.2 NC_007497.1 + 30687 0.68 0.464146
Target:  5'- aGGCCgccgGCGUcCACGCAGCaGguuucagCGUAg -3'
miRNA:   3'- -CCGGaa--CGCGuGUGCGUCG-Ca------GCAUa -5'
33158 5' -56.2 NC_007497.1 + 35826 0.68 0.464146
Target:  5'- cGGCugccgcguugCUUGCGCgAUGCGCAGCacGUCGUc- -3'
miRNA:   3'- -CCG----------GAACGCG-UGUGCGUCG--CAGCAua -5'
33158 5' -56.2 NC_007497.1 + 23184 0.68 0.454017
Target:  5'- aGCUgacGCGCuuuCAUGCGcGCGUCGUAg -3'
miRNA:   3'- cCGGaa-CGCGu--GUGCGU-CGCAGCAUa -5'
33158 5' -56.2 NC_007497.1 + 23894 0.68 0.454016
Target:  5'- uGGCCg-GCGCGCACGUccuucGUGUCGc-- -3'
miRNA:   3'- -CCGGaaCGCGUGUGCGu----CGCAGCaua -5'
33158 5' -56.2 NC_007497.1 + 35566 0.68 0.434125
Target:  5'- cGGCCcaUGC-CGCGCGCGaucGCGUCGg-- -3'
miRNA:   3'- -CCGGa-ACGcGUGUGCGU---CGCAGCaua -5'
33158 5' -56.2 NC_007497.1 + 21288 0.69 0.424371
Target:  5'- gGGCgCggcgGCGgGCGC-CGGCGUCGUGc -3'
miRNA:   3'- -CCG-Gaa--CGCgUGUGcGUCGCAGCAUa -5'
33158 5' -56.2 NC_007497.1 + 22854 0.69 0.405261
Target:  5'- cGGCCgccaucguuCGCGCGCGCuGCGaCGUAa -3'
miRNA:   3'- -CCGGaac------GCGUGUGCGuCGCaGCAUa -5'
33158 5' -56.2 NC_007497.1 + 31739 0.69 0.395912
Target:  5'- aGCUUUGCGaa-GCGCAGCGagCGUGa -3'
miRNA:   3'- cCGGAACGCgugUGCGUCGCa-GCAUa -5'
33158 5' -56.2 NC_007497.1 + 4296 0.7 0.351308
Target:  5'- cGCCggGCGCugGCgaagacguuGCAGCGUCGc-- -3'
miRNA:   3'- cCGGaaCGCGugUG---------CGUCGCAGCaua -5'
33158 5' -56.2 NC_007497.1 + 8352 0.7 0.334492
Target:  5'- uGCCgaGCuGCGCGCGCAGaUGUCGg-- -3'
miRNA:   3'- cCGGaaCG-CGUGUGCGUC-GCAGCaua -5'
33158 5' -56.2 NC_007497.1 + 11775 0.7 0.334492
Target:  5'- cGCCUucggGCGCACugGCGGUaUCGg-- -3'
miRNA:   3'- cCGGAa---CGCGUGugCGUCGcAGCaua -5'
33158 5' -56.2 NC_007497.1 + 12829 0.7 0.326308
Target:  5'- cGGCgaUGgGUACACGCAGCG-CGc-- -3'
miRNA:   3'- -CCGgaACgCGUGUGCGUCGCaGCaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.