miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33159 3' -56 NC_007497.1 + 38965 0.67 0.585812
Target:  5'- uCCGcACccucCAGuGCGCCGA--CCGCUCGg -3'
miRNA:   3'- -GGCuUGu---GUC-CGCGGUUacGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 21828 0.67 0.585812
Target:  5'- cCCaAGCgACGGGCuGCCGAUGCUuccuCUCGa -3'
miRNA:   3'- -GGcUUG-UGUCCG-CGGUUACGGc---GAGC- -5'
33159 3' -56 NC_007497.1 + 33729 0.67 0.573762
Target:  5'- gCCGAgccuuucGCGCAGGCGaaauCCGgugaucucgucGUGCUGCUUa -3'
miRNA:   3'- -GGCU-------UGUGUCCGC----GGU-----------UACGGCGAGc -5'
33159 3' -56 NC_007497.1 + 36470 0.67 0.563947
Target:  5'- gCCGAGcCGCA-GCGCCAGUGUCauUUCGa -3'
miRNA:   3'- -GGCUU-GUGUcCGCGGUUACGGc-GAGC- -5'
33159 3' -56 NC_007497.1 + 19338 0.67 0.563947
Target:  5'- aCCGAuggagauCGgGGGCGCCGAcacgGCCugaGUUCGa -3'
miRNA:   3'- -GGCUu------GUgUCCGCGGUUa---CGG---CGAGC- -5'
33159 3' -56 NC_007497.1 + 23262 0.67 0.563947
Target:  5'- gCCGGuauccCAUGGGCGCUgcuUGCCGCa-- -3'
miRNA:   3'- -GGCUu----GUGUCCGCGGuu-ACGGCGagc -5'
33159 3' -56 NC_007497.1 + 18530 0.67 0.563947
Target:  5'- gCGAGCGggucgAGGCGCUugaGCCGCUUa -3'
miRNA:   3'- gGCUUGUg----UCCGCGGuuaCGGCGAGc -5'
33159 3' -56 NC_007497.1 + 22819 0.67 0.557428
Target:  5'- aCCGGGCGCAGaCGCCGAacucgaaacgucaguUGCgGC-CGc -3'
miRNA:   3'- -GGCUUGUGUCcGCGGUU---------------ACGgCGaGC- -5'
33159 3' -56 NC_007497.1 + 40933 0.67 0.553094
Target:  5'- gCGAugACcgAGGCuGCCGAcGCCGCa-- -3'
miRNA:   3'- gGCUugUG--UCCG-CGGUUaCGGCGagc -5'
33159 3' -56 NC_007497.1 + 15087 0.67 0.553094
Target:  5'- uCCGAacgGCACGGcGCaGCCGAgcaugGCCGaUCGu -3'
miRNA:   3'- -GGCU---UGUGUC-CG-CGGUUa----CGGCgAGC- -5'
33159 3' -56 NC_007497.1 + 32765 0.67 0.542304
Target:  5'- gCCGAuCAC-GGUaCCGGUuucGCCGCUCGc -3'
miRNA:   3'- -GGCUuGUGuCCGcGGUUA---CGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 42813 0.67 0.542304
Target:  5'- uUCGAGgaAUGGGCGCCcGUGCgCGCgCGa -3'
miRNA:   3'- -GGCUUg-UGUCCGCGGuUACG-GCGaGC- -5'
33159 3' -56 NC_007497.1 + 38526 0.67 0.542304
Target:  5'- gCGAGuCGCuGGCGCCAcgGCUcgGCaugUCGg -3'
miRNA:   3'- gGCUU-GUGuCCGCGGUuaCGG--CG---AGC- -5'
33159 3' -56 NC_007497.1 + 27111 0.67 0.542304
Target:  5'- gCGGAUACGGcCGCCGAUgcGCCGCccCGc -3'
miRNA:   3'- gGCUUGUGUCcGCGGUUA--CGGCGa-GC- -5'
33159 3' -56 NC_007497.1 + 6983 0.68 0.535864
Target:  5'- uCCGGACGCaaucggaauugucggGGGCGCCAaaggcuacGUGuCCGUcgCGa -3'
miRNA:   3'- -GGCUUGUG---------------UCCGCGGU--------UAC-GGCGa-GC- -5'
33159 3' -56 NC_007497.1 + 12265 0.68 0.520943
Target:  5'- -aGGcCGCAG-CGCgGAuUGCCGCUCGg -3'
miRNA:   3'- ggCUuGUGUCcGCGgUU-ACGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 8309 0.68 0.510386
Target:  5'- uCCGAcucgaaaugACACuGGCGC---UGCgGCUCGg -3'
miRNA:   3'- -GGCU---------UGUGuCCGCGguuACGgCGAGC- -5'
33159 3' -56 NC_007497.1 + 15131 0.68 0.510386
Target:  5'- gCGAGCGCGcuGGCauuccccaauggGUCAuuGUGUCGCUCGg -3'
miRNA:   3'- gGCUUGUGU--CCG------------CGGU--UACGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 14964 0.68 0.489548
Target:  5'- gCCGGAaa-AGGCGCCGGaGCCGgUgCGg -3'
miRNA:   3'- -GGCUUgugUCCGCGGUUaCGGCgA-GC- -5'
33159 3' -56 NC_007497.1 + 39402 0.68 0.489548
Target:  5'- aCGGACACGGGCGagcgcGCCGgaCGu -3'
miRNA:   3'- gGCUUGUGUCCGCgguuaCGGCgaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.