miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33159 5' -56.7 NC_007497.1 + 30343 0.66 0.578083
Target:  5'- cACCGCGuCGAGAuacUUCGCcagCGUGCg- -3'
miRNA:   3'- -UGGCGC-GCUCU---AGGCGcuaGUACGac -5'
33159 5' -56.7 NC_007497.1 + 33194 0.66 0.556228
Target:  5'- gGCCGCGCGAaucgacgccuGAUCgCG-GAUCAgGCUc -3'
miRNA:   3'- -UGGCGCGCU----------CUAG-GCgCUAGUaCGAc -5'
33159 5' -56.7 NC_007497.1 + 11628 0.67 0.534618
Target:  5'- cGCCGUGCagcucgaaaagGAGGUCCGCuaucacgaggcGAUCAauaaGCUGa -3'
miRNA:   3'- -UGGCGCG-----------CUCUAGGCG-----------CUAGUa---CGAC- -5'
33159 5' -56.7 NC_007497.1 + 11572 0.67 0.534618
Target:  5'- gACgGCGacaaGAgccuGAUCCGCGAUCAgGCg- -3'
miRNA:   3'- -UGgCGCg---CU----CUAGGCGCUAGUaCGac -5'
33159 5' -56.7 NC_007497.1 + 574 0.67 0.531402
Target:  5'- -gCGCGCGAGucgaucauUCCGCcgccgauuuucccgGAUCAgGCUGa -3'
miRNA:   3'- ugGCGCGCUCu-------AGGCG--------------CUAGUaCGAC- -5'
33159 5' -56.7 NC_007497.1 + 11337 0.67 0.50279
Target:  5'- gGCCGCGC-AGGUCgCGCGuAUCG-GCg- -3'
miRNA:   3'- -UGGCGCGcUCUAG-GCGC-UAGUaCGac -5'
33159 5' -56.7 NC_007497.1 + 9942 0.67 0.50279
Target:  5'- -gCGCGCGAGA-CCGCGGcCGcGCa- -3'
miRNA:   3'- ugGCGCGCUCUaGGCGCUaGUaCGac -5'
33159 5' -56.7 NC_007497.1 + 11743 0.67 0.492363
Target:  5'- gUCGCGCGAGAgcuggCCGCGcuGUCGauggGCg- -3'
miRNA:   3'- uGGCGCGCUCUa----GGCGC--UAGUa---CGac -5'
33159 5' -56.7 NC_007497.1 + 3417 0.67 0.482037
Target:  5'- --aGCaaaaCGAGGUCCGCGAg-AUGCUGg -3'
miRNA:   3'- uggCGc---GCUCUAGGCGCUagUACGAC- -5'
33159 5' -56.7 NC_007497.1 + 11010 0.68 0.471816
Target:  5'- cGCCuuGCGGGAUUCGUGuccCGUGCUa -3'
miRNA:   3'- -UGGcgCGCUCUAGGCGCua-GUACGAc -5'
33159 5' -56.7 NC_007497.1 + 33234 0.69 0.394378
Target:  5'- aGCCGCGCGAGG-CCaaGggCuggGUGCUGa -3'
miRNA:   3'- -UGGCGCGCUCUaGGcgCuaG---UACGAC- -5'
33159 5' -56.7 NC_007497.1 + 14926 0.7 0.350346
Target:  5'- uCCGCGCGAGugCUGCGGgcucaUCGUGCg- -3'
miRNA:   3'- uGGCGCGCUCuaGGCGCU-----AGUACGac -5'
33159 5' -56.7 NC_007497.1 + 2689 0.71 0.280216
Target:  5'- uGCgGCGCGAGAUCC-CGGUCuucGCg- -3'
miRNA:   3'- -UGgCGCGCUCUAGGcGCUAGua-CGac -5'
33159 5' -56.7 NC_007497.1 + 33136 0.72 0.265548
Target:  5'- gGCCGCGCGAGGUUgCGaCGAguuaccacgccacUCAUcGCUGg -3'
miRNA:   3'- -UGGCGCGCUCUAG-GC-GCU-------------AGUA-CGAC- -5'
33159 5' -56.7 NC_007497.1 + 32641 1.07 0.000722
Target:  5'- aACCGCGCGAGAUCCGCGAUCAUGCUGu -3'
miRNA:   3'- -UGGCGCGCUCUAGGCGCUAGUACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.