miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33160 3' -57.1 NC_007497.1 + 218 0.67 0.47539
Target:  5'- gGUGCgCGACGaugugauCGCCGAUCGUGCcaaGCGg -3'
miRNA:   3'- gCGCG-GUUGU-------GCGGUUAGCGCGa--CGU- -5'
33160 3' -57.1 NC_007497.1 + 418 0.67 0.455163
Target:  5'- -uUGCCAGCGCGCCAcgauccaggcgucAUCGuCGCgacacGCGa -3'
miRNA:   3'- gcGCGGUUGUGCGGU-------------UAGC-GCGa----CGU- -5'
33160 3' -57.1 NC_007497.1 + 806 0.66 0.561323
Target:  5'- -aCGCCGACgGCGCCcGUCuuGCUGUu -3'
miRNA:   3'- gcGCGGUUG-UGCGGuUAGcgCGACGu -5'
33160 3' -57.1 NC_007497.1 + 1255 0.69 0.388289
Target:  5'- uGCGUCGAgUACGCCAG-CGCGaaccgcaCUGCAu -3'
miRNA:   3'- gCGCGGUU-GUGCGGUUaGCGC-------GACGU- -5'
33160 3' -57.1 NC_007497.1 + 2406 0.69 0.380169
Target:  5'- aGCGCCuguGC-CGCgauGUCGCGCUuaGCAg -3'
miRNA:   3'- gCGCGGu--UGuGCGgu-UAGCGCGA--CGU- -5'
33160 3' -57.1 NC_007497.1 + 2441 0.7 0.337171
Target:  5'- aGCGCUgcgaAACAUGgCGGUgcUGCGCUGCGu -3'
miRNA:   3'- gCGCGG----UUGUGCgGUUA--GCGCGACGU- -5'
33160 3' -57.1 NC_007497.1 + 2460 0.77 0.112315
Target:  5'- gCGCGgCGACGCGCCAucaCGCGCaUGUAu -3'
miRNA:   3'- -GCGCgGUUGUGCGGUua-GCGCG-ACGU- -5'
33160 3' -57.1 NC_007497.1 + 3567 0.71 0.290396
Target:  5'- uGCGCCucgAGCugGCCGuUCGCGa-GCAu -3'
miRNA:   3'- gCGCGG---UUGugCGGUuAGCGCgaCGU- -5'
33160 3' -57.1 NC_007497.1 + 3730 0.67 0.476413
Target:  5'- uCGCGCCGGCcuucaguCGaCCGAgCGC-CUGCAu -3'
miRNA:   3'- -GCGCGGUUGu------GC-GGUUaGCGcGACGU- -5'
33160 3' -57.1 NC_007497.1 + 6249 0.7 0.297825
Target:  5'- uCGCGcCCGACAUGCCGagccGUgGCGCcaGCGa -3'
miRNA:   3'- -GCGC-GGUUGUGCGGU----UAgCGCGa-CGU- -5'
33160 3' -57.1 NC_007497.1 + 6625 0.7 0.337171
Target:  5'- gGCGCUcaGGCGCGCCAcgGUCGC-CgGCGc -3'
miRNA:   3'- gCGCGG--UUGUGCGGU--UAGCGcGaCGU- -5'
33160 3' -57.1 NC_007497.1 + 6880 0.66 0.507592
Target:  5'- gGCGuUCGACGCGUCGAUCGCucaggccgaggGC-GCAa -3'
miRNA:   3'- gCGC-GGUUGUGCGGUUAGCG-----------CGaCGU- -5'
33160 3' -57.1 NC_007497.1 + 7993 0.68 0.436386
Target:  5'- cCGCGCguuCugGCuCGAUC-CGCUGCGc -3'
miRNA:   3'- -GCGCGguuGugCG-GUUAGcGCGACGU- -5'
33160 3' -57.1 NC_007497.1 + 8465 0.67 0.446214
Target:  5'- cCGCaGCCGACGaucaGCCGcauuUUGCGCgGCGg -3'
miRNA:   3'- -GCG-CGGUUGUg---CGGUu---AGCGCGaCGU- -5'
33160 3' -57.1 NC_007497.1 + 8861 0.73 0.218108
Target:  5'- -aUGCCAGCACG-CAAUUGCugGCUGCAa -3'
miRNA:   3'- gcGCGGUUGUGCgGUUAGCG--CGACGU- -5'
33160 3' -57.1 NC_007497.1 + 9157 0.69 0.371282
Target:  5'- uCGCGUCGG---GCCAGUUGCGCggGCAg -3'
miRNA:   3'- -GCGCGGUUgugCGGUUAGCGCGa-CGU- -5'
33160 3' -57.1 NC_007497.1 + 9214 0.67 0.476413
Target:  5'- gCGUgGCCGACGCG---AUCGCGCgcgGCAu -3'
miRNA:   3'- -GCG-CGGUUGUGCgguUAGCGCGa--CGU- -5'
33160 3' -57.1 NC_007497.1 + 9745 0.67 0.456163
Target:  5'- uGCGCgCGAUGCGCgAAagccUCGCGaUGCAg -3'
miRNA:   3'- gCGCG-GUUGUGCGgUU----AGCGCgACGU- -5'
33160 3' -57.1 NC_007497.1 + 9913 0.67 0.446214
Target:  5'- -uCGCCGGgACGCCGuaugcggccgugAUCGCGC-GCGa -3'
miRNA:   3'- gcGCGGUUgUGCGGU------------UAGCGCGaCGU- -5'
33160 3' -57.1 NC_007497.1 + 10136 0.69 0.345481
Target:  5'- gCGCGCgAGCGCGCCGAacgagGCGCcaccGCGg -3'
miRNA:   3'- -GCGCGgUUGUGCGGUUag---CGCGa---CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.