miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33160 3' -57.1 NC_007497.1 + 18261 0.67 0.476413
Target:  5'- gGCGCUAcguCGCGCguGUgCGCGC-GCAg -3'
miRNA:   3'- gCGCGGUu--GUGCGguUA-GCGCGaCGU- -5'
33160 3' -57.1 NC_007497.1 + 3730 0.67 0.476413
Target:  5'- uCGCGCCGGCcuucaguCGaCCGAgCGC-CUGCAu -3'
miRNA:   3'- -GCGCGGUUGu------GC-GGUUaGCGcGACGU- -5'
33160 3' -57.1 NC_007497.1 + 31726 0.67 0.476413
Target:  5'- cCGCGC--ACGCGCCAGcuUUGCGaaGCGc -3'
miRNA:   3'- -GCGCGguUGUGCGGUU--AGCGCgaCGU- -5'
33160 3' -57.1 NC_007497.1 + 9214 0.67 0.476413
Target:  5'- gCGUgGCCGACGCG---AUCGCGCgcgGCAu -3'
miRNA:   3'- -GCG-CGGUUGUGCgguUAGCGCGa--CGU- -5'
33160 3' -57.1 NC_007497.1 + 218 0.67 0.47539
Target:  5'- gGUGCgCGACGaugugauCGCCGAUCGUGCcaaGCGg -3'
miRNA:   3'- gCGCG-GUUGU-------GCGGUUAGCGCGa--CGU- -5'
33160 3' -57.1 NC_007497.1 + 30216 0.67 0.474367
Target:  5'- aGCGCCuuGCAucaccuuCGCCGcgaaguaGUCGCGgaGCGa -3'
miRNA:   3'- gCGCGGu-UGU-------GCGGU-------UAGCGCgaCGU- -5'
33160 3' -57.1 NC_007497.1 + 35997 0.67 0.466231
Target:  5'- aGCGaCCcGCGCGCagccuCGAUCGCGCguaccguuaccUGCAc -3'
miRNA:   3'- gCGC-GGuUGUGCG-----GUUAGCGCG-----------ACGU- -5'
33160 3' -57.1 NC_007497.1 + 9745 0.67 0.456163
Target:  5'- uGCGCgCGAUGCGCgAAagccUCGCGaUGCAg -3'
miRNA:   3'- gCGCG-GUUGUGCGgUU----AGCGCgACGU- -5'
33160 3' -57.1 NC_007497.1 + 40517 0.67 0.456163
Target:  5'- cCGUGCUGaucggcgacgcACACGCCGcucAUCGCGUgaUGCu -3'
miRNA:   3'- -GCGCGGU-----------UGUGCGGU---UAGCGCG--ACGu -5'
33160 3' -57.1 NC_007497.1 + 38174 0.67 0.456163
Target:  5'- gCGCGCCugaGCGCCuuAGUCGa-CUGCGc -3'
miRNA:   3'- -GCGCGGuugUGCGG--UUAGCgcGACGU- -5'
33160 3' -57.1 NC_007497.1 + 16323 0.67 0.456163
Target:  5'- gGCGUCGGaACGCaua-CGCGCUGCu -3'
miRNA:   3'- gCGCGGUUgUGCGguuaGCGCGACGu -5'
33160 3' -57.1 NC_007497.1 + 39173 0.67 0.456163
Target:  5'- aCGCGCUG--ACGCUGAUCGUugagGCUGUAu -3'
miRNA:   3'- -GCGCGGUugUGCGGUUAGCG----CGACGU- -5'
33160 3' -57.1 NC_007497.1 + 418 0.67 0.455163
Target:  5'- -uUGCCAGCGCGCCAcgauccaggcgucAUCGuCGCgacacGCGa -3'
miRNA:   3'- gcGCGGUUGUGCGGU-------------UAGC-GCGa----CGU- -5'
33160 3' -57.1 NC_007497.1 + 9913 0.67 0.446214
Target:  5'- -uCGCCGGgACGCCGuaugcggccgugAUCGCGC-GCGa -3'
miRNA:   3'- gcGCGGUUgUGCGGU------------UAGCGCGaCGU- -5'
33160 3' -57.1 NC_007497.1 + 17219 0.67 0.446214
Target:  5'- gGCgGCCGACGCGUUcAagGUGUUGCAg -3'
miRNA:   3'- gCG-CGGUUGUGCGGuUagCGCGACGU- -5'
33160 3' -57.1 NC_007497.1 + 26793 0.67 0.446214
Target:  5'- gCGCGCCGucgucgaucgccGCGuacuUGCCcggcucauGUCGCGUUGCAg -3'
miRNA:   3'- -GCGCGGU------------UGU----GCGGu-------UAGCGCGACGU- -5'
33160 3' -57.1 NC_007497.1 + 8465 0.67 0.446214
Target:  5'- cCGCaGCCGACGaucaGCCGcauuUUGCGCgGCGg -3'
miRNA:   3'- -GCG-CGGUUGUg---CGGUu---AGCGCGaCGU- -5'
33160 3' -57.1 NC_007497.1 + 7993 0.68 0.436386
Target:  5'- cCGCGCguuCugGCuCGAUC-CGCUGCGc -3'
miRNA:   3'- -GCGCGguuGugCG-GUUAGcGCGACGU- -5'
33160 3' -57.1 NC_007497.1 + 39224 0.68 0.436386
Target:  5'- cCGcCGCCGACGCGCUucGUCGUGUa--- -3'
miRNA:   3'- -GC-GCGGUUGUGCGGu-UAGCGCGacgu -5'
33160 3' -57.1 NC_007497.1 + 27073 0.68 0.436386
Target:  5'- gGCGCCuuguccAACACGaCAAcCGCGCcgGCAg -3'
miRNA:   3'- gCGCGG------UUGUGCgGUUaGCGCGa-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.