Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 1069 | 0.66 | 0.715602 |
Target: 5'- cACGAGCACGgcaggucaCGAgGGGcagcgCGCGCGAu -3' miRNA: 3'- cUGCUUGUGCa-------GCUgCUCa----GCGCGUU- -5' |
|||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 4561 | 0.66 | 0.693556 |
Target: 5'- cGACGuccGACGCGUUGGCGAaggucgacaagGUCaGCGCu- -3' miRNA: 3'- -CUGC---UUGUGCAGCUGCU-----------CAG-CGCGuu -5' |
|||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 5568 | 0.68 | 0.597075 |
Target: 5'- cGACGaAGCGCGUCGGCGGcggccugcugaauccGgagccgaugCGCGCGAu -3' miRNA: 3'- -CUGC-UUGUGCAGCUGCU---------------Ca--------GCGCGUU- -5' |
|||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 5839 | 0.71 | 0.404045 |
Target: 5'- uGACGAGCgaGCG-CGGCGAGUUGCuCGAg -3' miRNA: 3'- -CUGCUUG--UGCaGCUGCUCAGCGcGUU- -5' |
|||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 5924 | 0.7 | 0.47337 |
Target: 5'- uGCGAACGCGggugUCGAgGAugacGUCGUGCAGa -3' miRNA: 3'- cUGCUUGUGC----AGCUgCU----CAGCGCGUU- -5' |
|||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 6879 | 0.67 | 0.637558 |
Target: 5'- cGGCGuucGACGCGUCGAucgcucaggcCGAGg-GCGCAAu -3' miRNA: 3'- -CUGC---UUGUGCAGCU----------GCUCagCGCGUU- -5' |
|||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 8781 | 0.66 | 0.715602 |
Target: 5'- aACGGuACGCG-CGAuCGAGgcugCGCGCGGg -3' miRNA: 3'- cUGCU-UGUGCaGCU-GCUCa---GCGCGUU- -5' |
|||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 8920 | 0.69 | 0.526356 |
Target: 5'- cGCGAuCAgGUCGAUuuugcGGUCGCGCAGg -3' miRNA: 3'- cUGCUuGUgCAGCUGc----UCAGCGCGUU- -5' |
|||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 10673 | 0.67 | 0.671261 |
Target: 5'- cGCGAGCuugcgcgacuCGUCGACGuguucGUCGCgGCGAc -3' miRNA: 3'- cUGCUUGu---------GCAGCUGCu----CAGCG-CGUU- -5' |
|||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 11316 | 0.68 | 0.5803 |
Target: 5'- cGACGAcacgaugGCGCaGUCGGCcgcgcaGGUCGCGCGu -3' miRNA: 3'- -CUGCU-------UGUG-CAGCUGc-----UCAGCGCGUu -5' |
|||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 11974 | 0.66 | 0.715602 |
Target: 5'- -uUGAGCGCGaUUGGCGuGUUGgCGCGAg -3' miRNA: 3'- cuGCUUGUGC-AGCUGCuCAGC-GCGUU- -5' |
|||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 12369 | 0.72 | 0.376359 |
Target: 5'- -cCGGGCACGUCGACGAG-CGacaGUAu -3' miRNA: 3'- cuGCUUGUGCAGCUGCUCaGCg--CGUu -5' |
|||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 15972 | 0.74 | 0.293677 |
Target: 5'- cGAUGGGCGCuUCGAUGAugcucggcgguGUCGCGCAAa -3' miRNA: 3'- -CUGCUUGUGcAGCUGCU-----------CAGCGCGUU- -5' |
|||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 17767 | 0.66 | 0.715602 |
Target: 5'- cGGCGAuccugccgucGgGCGUCGcAC-AGUCGCGCGc -3' miRNA: 3'- -CUGCU----------UgUGCAGC-UGcUCAGCGCGUu -5' |
|||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 21603 | 0.74 | 0.286235 |
Target: 5'- cGACGugcucggcCGCGUUGACGAG-CGCGCGGg -3' miRNA: 3'- -CUGCuu------GUGCAGCUGCUCaGCGCGUU- -5' |
|||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 23214 | 0.67 | 0.66005 |
Target: 5'- -uCGAGCGCcaagacgccGUCGACGAGcUGCGCc- -3' miRNA: 3'- cuGCUUGUG---------CAGCUGCUCaGCGCGuu -5' |
|||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 23278 | 0.66 | 0.704616 |
Target: 5'- cGACGAGCugGUCGACacgcUGCuGCAGg -3' miRNA: 3'- -CUGCUUGugCAGCUGcucaGCG-CGUU- -5' |
|||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 23452 | 0.68 | 0.581416 |
Target: 5'- cGGCGGccgccuuCAUGUCGGCGAucUCGCGCGc -3' miRNA: 3'- -CUGCUu------GUGCAGCUGCUc-AGCGCGUu -5' |
|||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 25960 | 0.67 | 0.626299 |
Target: 5'- cGGCGAGCAaggUGUCGAUGGcGUCG-GCGg -3' miRNA: 3'- -CUGCUUGU---GCAGCUGCU-CAGCgCGUu -5' |
|||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 27095 | 0.68 | 0.603806 |
Target: 5'- gGGCGAuuccguCGCG-CGAUGAGcUCGCGCc- -3' miRNA: 3'- -CUGCUu-----GUGCaGCUGCUC-AGCGCGuu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home