Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33161 | 3' | -54.2 | NC_007497.1 | + | 5568 | 0.68 | 0.597075 |
Target: 5'- cGACGaAGCGCGUCGGCGGcggccugcugaauccGgagccgaugCGCGCGAu -3' miRNA: 3'- -CUGC-UUGUGCAGCUGCU---------------Ca--------GCGCGUU- -5' |
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33161 | 3' | -54.2 | NC_007497.1 | + | 29883 | 0.68 | 0.592594 |
Target: 5'- cGCGGAUAC-UCGGCGAGU-GCGUGAu -3' miRNA: 3'- cUGCUUGUGcAGCUGCUCAgCGCGUU- -5' |
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33161 | 3' | -54.2 | NC_007497.1 | + | 34411 | 0.68 | 0.591474 |
Target: 5'- cGGCGccuGCAUGUCGAucaaacuCGAcGUCGCGCu- -3' miRNA: 3'- -CUGCu--UGUGCAGCU-------GCU-CAGCGCGuu -5' |
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33161 | 3' | -54.2 | NC_007497.1 | + | 23452 | 0.68 | 0.581416 |
Target: 5'- cGGCGGccgccuuCAUGUCGGCGAucUCGCGCGc -3' miRNA: 3'- -CUGCUu------GUGCAGCUGCUc-AGCGCGUu -5' |
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33161 | 3' | -54.2 | NC_007497.1 | + | 11316 | 0.68 | 0.5803 |
Target: 5'- cGACGAcacgaugGCGCaGUCGGCcgcgcaGGUCGCGCGu -3' miRNA: 3'- -CUGCU-------UGUG-CAGCUGc-----UCAGCGCGUu -5' |
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33161 | 3' | -54.2 | NC_007497.1 | + | 28194 | 0.69 | 0.537231 |
Target: 5'- -cCGAACACGccggaCGACGGGUCacucuucugcaGCGCAGg -3' miRNA: 3'- cuGCUUGUGCa----GCUGCUCAG-----------CGCGUU- -5' |
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33161 | 3' | -54.2 | NC_007497.1 | + | 34258 | 0.69 | 0.526356 |
Target: 5'- aACGAugACGcUCuGCGAGgCGCGCGAu -3' miRNA: 3'- cUGCUugUGC-AGcUGCUCaGCGCGUU- -5' |
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33161 | 3' | -54.2 | NC_007497.1 | + | 8920 | 0.69 | 0.526356 |
Target: 5'- cGCGAuCAgGUCGAUuuugcGGUCGCGCAGg -3' miRNA: 3'- cUGCUuGUgCAGCUGc----UCAGCGCGUU- -5' |
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33161 | 3' | -54.2 | NC_007497.1 | + | 5924 | 0.7 | 0.47337 |
Target: 5'- uGCGAACGCGggugUCGAgGAugacGUCGUGCAGa -3' miRNA: 3'- cUGCUUGUGC----AGCUgCU----CAGCGCGUU- -5' |
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33161 | 3' | -54.2 | NC_007497.1 | + | 41549 | 0.7 | 0.463091 |
Target: 5'- cGAgGAGCACugGUCGACG-GUUGCGUg- -3' miRNA: 3'- -CUgCUUGUG--CAGCUGCuCAGCGCGuu -5' |
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33161 | 3' | -54.2 | NC_007497.1 | + | 5839 | 0.71 | 0.404045 |
Target: 5'- uGACGAGCgaGCG-CGGCGAGUUGCuCGAg -3' miRNA: 3'- -CUGCUUG--UGCaGCUGCUCAGCGcGUU- -5' |
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33161 | 3' | -54.2 | NC_007497.1 | + | 12369 | 0.72 | 0.376359 |
Target: 5'- -cCGGGCACGUCGACGAG-CGacaGUAu -3' miRNA: 3'- cuGCUUGUGCAGCUGCUCaGCg--CGUu -5' |
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33161 | 3' | -54.2 | NC_007497.1 | + | 15972 | 0.74 | 0.293677 |
Target: 5'- cGAUGGGCGCuUCGAUGAugcucggcgguGUCGCGCAAa -3' miRNA: 3'- -CUGCUUGUGcAGCUGCU-----------CAGCGCGUU- -5' |
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33161 | 3' | -54.2 | NC_007497.1 | + | 21603 | 0.74 | 0.286235 |
Target: 5'- cGACGugcucggcCGCGUUGACGAG-CGCGCGGg -3' miRNA: 3'- -CUGCuu------GUGCAGCUGCUCaGCGCGUU- -5' |
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33161 | 3' | -54.2 | NC_007497.1 | + | 29792 | 0.75 | 0.232002 |
Target: 5'- cGCGAACugGUCGGuCgGAGUCGgCGCGAc -3' miRNA: 3'- cUGCUUGugCAGCU-G-CUCAGC-GCGUU- -5' |
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33161 | 3' | -54.2 | NC_007497.1 | + | 34107 | 1.07 | 0.001496 |
Target: 5'- cGACGAACACGUCGACGAGUCGCGCAAg -3' miRNA: 3'- -CUGCUUGUGCAGCUGCUCAGCGCGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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