Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33162 | 3' | -50.7 | NC_007497.1 | + | 28074 | 0.66 | 0.917488 |
Target: 5'- cCGUAGCGCGUUgagcgagUGcAUCG-UCGaccUUCCu -3' miRNA: 3'- cGCAUCGCGCAG-------AC-UAGCuAGC---AAGG- -5' |
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33162 | 3' | -50.7 | NC_007497.1 | + | 17333 | 0.66 | 0.897864 |
Target: 5'- cGUGUacacGGCgGCGaacgUGAUCGAuggcUCGUUCCg -3' miRNA: 3'- -CGCA----UCG-CGCag--ACUAGCU----AGCAAGG- -5' |
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33162 | 3' | -50.7 | NC_007497.1 | + | 33089 | 0.66 | 0.924292 |
Target: 5'- cGCGUAGUcggccagcucgGCGUCgaucUGcgCGcugCGUUCCu -3' miRNA: 3'- -CGCAUCG-----------CGCAG----ACuaGCua-GCAAGG- -5' |
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33162 | 3' | -50.7 | NC_007497.1 | + | 38169 | 0.66 | 0.911658 |
Target: 5'- cCGUGGCGCGcCUGAgcgccuuagUCGAcugCGcUUUCg -3' miRNA: 3'- cGCAUCGCGCaGACU---------AGCUa--GC-AAGG- -5' |
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33162 | 3' | -50.7 | NC_007497.1 | + | 3704 | 0.66 | 0.904905 |
Target: 5'- gGCGUAGCGCugcucgGUCUuGUUcAUCGcgCCg -3' miRNA: 3'- -CGCAUCGCG------CAGAcUAGcUAGCaaGG- -5' |
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33162 | 3' | -50.7 | NC_007497.1 | + | 160 | 0.66 | 0.897864 |
Target: 5'- uGCGUuuuGCagaGCGUCUGuauGUUGGUCGggUCg -3' miRNA: 3'- -CGCAu--CG---CGCAGAC---UAGCUAGCaaGG- -5' |
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33162 | 3' | -50.7 | NC_007497.1 | + | 27821 | 0.67 | 0.882936 |
Target: 5'- aCGU-GCGCGUCUcagGAUCGua-GUUCg -3' miRNA: 3'- cGCAuCGCGCAGA---CUAGCuagCAAGg -5' |
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33162 | 3' | -50.7 | NC_007497.1 | + | 24485 | 0.67 | 0.882936 |
Target: 5'- aGCGUAGCGUcgagcugcauGUCgUGcUCGGUCGc-CCa -3' miRNA: 3'- -CGCAUCGCG----------CAG-ACuAGCUAGCaaGG- -5' |
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33162 | 3' | -50.7 | NC_007497.1 | + | 1416 | 0.68 | 0.812917 |
Target: 5'- gGCGUGGCgcaGCGUCcGAUUGcgCGg-CCa -3' miRNA: 3'- -CGCAUCG---CGCAGaCUAGCuaGCaaGG- -5' |
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33162 | 3' | -50.7 | NC_007497.1 | + | 36168 | 0.68 | 0.849859 |
Target: 5'- gGCGgGGCGCGUCggccgccCGGUCGUguggCUg -3' miRNA: 3'- -CGCaUCGCGCAGacua---GCUAGCAa---GG- -5' |
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33162 | 3' | -50.7 | NC_007497.1 | + | 33671 | 0.69 | 0.793194 |
Target: 5'- cGCGagcucGCGCGUCaGAuugUCGAU-GUUCCg -3' miRNA: 3'- -CGCau---CGCGCAGaCU---AGCUAgCAAGG- -5' |
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33162 | 3' | -50.7 | NC_007497.1 | + | 20947 | 0.69 | 0.783059 |
Target: 5'- cGCGccuggAGCaCGUCUGAUCGAgcacgCGgagCCc -3' miRNA: 3'- -CGCa----UCGcGCAGACUAGCUa----GCaa-GG- -5' |
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33162 | 3' | -50.7 | NC_007497.1 | + | 20786 | 0.71 | 0.685849 |
Target: 5'- cGCGUGcuCGCGguucggacgaUGAUCGAUCuGUUCCu -3' miRNA: 3'- -CGCAUc-GCGCag--------ACUAGCUAG-CAAGG- -5' |
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33162 | 3' | -50.7 | NC_007497.1 | + | 2035 | 0.71 | 0.652016 |
Target: 5'- gGCGUaccGGCGCGguUCUGAUCGAgccaugCGUg-- -3' miRNA: 3'- -CGCA---UCGCGC--AGACUAGCUa-----GCAagg -5' |
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33162 | 3' | -50.7 | NC_007497.1 | + | 36824 | 0.72 | 0.584111 |
Target: 5'- uGCGUugcuGCGCGgccugCUGAUCuugUGUUCCa -3' miRNA: 3'- -CGCAu---CGCGCa----GACUAGcuaGCAAGG- -5' |
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33162 | 3' | -50.7 | NC_007497.1 | + | 29786 | 0.76 | 0.395711 |
Target: 5'- cGCG-AGCGCGaaCUGGUCGGUCGgagUCg -3' miRNA: 3'- -CGCaUCGCGCa-GACUAGCUAGCa--AGg -5' |
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33162 | 3' | -50.7 | NC_007497.1 | + | 16077 | 0.76 | 0.385476 |
Target: 5'- gGCGcgGGCGCGUCUGGcucaauccgccguUCGGUCGUgaggCUu -3' miRNA: 3'- -CGCa-UCGCGCAGACU-------------AGCUAGCAa---GG- -5' |
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33162 | 3' | -50.7 | NC_007497.1 | + | 34744 | 1.14 | 0.001234 |
Target: 5'- cGCGUAGCGCGUCUGAUCGAUCGUUCCc -3' miRNA: 3'- -CGCAUCGCGCAGACUAGCUAGCAAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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