miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33163 3' -55.8 NC_007497.1 + 35232 1.11 0.000421
Target:  5'- gAUCGCAGCCUGACGGGCAGCAAUACCa -3'
miRNA:   3'- -UAGCGUCGGACUGCCCGUCGUUAUGG- -5'
33163 3' -55.8 NC_007497.1 + 42241 0.67 0.507816
Target:  5'- --aGCAGCCgG-UGGGCAGgaucguccguCAAUACCu -3'
miRNA:   3'- uagCGUCGGaCuGCCCGUC----------GUUAUGG- -5'
33163 3' -55.8 NC_007497.1 + 37153 0.68 0.486596
Target:  5'- cUCGCcGCUUGcACGGGCcgugcggagaAGCGAcUGCCc -3'
miRNA:   3'- uAGCGuCGGAC-UGCCCG----------UCGUU-AUGG- -5'
33163 3' -55.8 NC_007497.1 + 8609 0.68 0.476144
Target:  5'- -cCGCAGCCacacGAcCGGGCGGCcgacgcGCCc -3'
miRNA:   3'- uaGCGUCGGa---CU-GCCCGUCGuua---UGG- -5'
33163 3' -55.8 NC_007497.1 + 29033 0.69 0.405439
Target:  5'- uGUCGCGcGCCUcGagcagaaauuuGCGgaagcccGGCAGCAAUACCg -3'
miRNA:   3'- -UAGCGU-CGGA-C-----------UGC-------CCGUCGUUAUGG- -5'
33163 3' -55.8 NC_007497.1 + 26319 0.7 0.335005
Target:  5'- cGUCGCGGCUcGGCGucCGGCuGUACCa -3'
miRNA:   3'- -UAGCGUCGGaCUGCccGUCGuUAUGG- -5'
33163 3' -55.8 NC_007497.1 + 26742 0.7 0.335005
Target:  5'- -gCGguGCCUGuACcgauGGCGGCAcgACCg -3'
miRNA:   3'- uaGCguCGGAC-UGc---CCGUCGUuaUGG- -5'
33163 3' -55.8 NC_007497.1 + 34571 0.72 0.259287
Target:  5'- --aGCgAGCCUGcGCGGGCGGCc--GCCg -3'
miRNA:   3'- uagCG-UCGGAC-UGCCCGUCGuuaUGG- -5'
33163 3' -55.8 NC_007497.1 + 40630 0.67 0.507816
Target:  5'- -cCGCAGCUcg--GGGCGGCAugACCg -3'
miRNA:   3'- uaGCGUCGGacugCCCGUCGUuaUGG- -5'
33163 3' -55.8 NC_007497.1 + 12534 0.67 0.497155
Target:  5'- --gGCAGCggugcuggugCUGGCGGGCAGUucGGUGgCg -3'
miRNA:   3'- uagCGUCG----------GACUGCCCGUCG--UUAUgG- -5'
33163 3' -55.8 NC_007497.1 + 11000 0.67 0.497155
Target:  5'- -aCGCAGCCga--GGcGCGGCAG-GCCg -3'
miRNA:   3'- uaGCGUCGGacugCC-CGUCGUUaUGG- -5'
33163 3' -55.8 NC_007497.1 + 27574 0.68 0.465805
Target:  5'- -gCGUcuGCCUGcGCGGGCGGCugcggggcgGCCg -3'
miRNA:   3'- uaGCGu-CGGAC-UGCCCGUCGuua------UGG- -5'
33163 3' -55.8 NC_007497.1 + 42576 0.68 0.435512
Target:  5'- cUgGCGGCCUGcCGuGGCgAGCcGUGCUa -3'
miRNA:   3'- uAgCGUCGGACuGC-CCG-UCGuUAUGG- -5'
33163 3' -55.8 NC_007497.1 + 19592 0.68 0.435512
Target:  5'- uGUCGCcGCCgauaUGuCGGGCGGUGA-GCCg -3'
miRNA:   3'- -UAGCGuCGG----ACuGCCCGUCGUUaUGG- -5'
33163 3' -55.8 NC_007497.1 + 21276 0.69 0.406389
Target:  5'- gGUCGCGcuGCUgGGCGcGGCGGCGGgcGCCg -3'
miRNA:   3'- -UAGCGU--CGGaCUGC-CCGUCGUUa-UGG- -5'
33163 3' -55.8 NC_007497.1 + 29726 0.69 0.386744
Target:  5'- cAUCGCGGCCcuccgcgauguacUGGCGGGCcacuaucagGGCGAcGCg -3'
miRNA:   3'- -UAGCGUCGG-------------ACUGCCCG---------UCGUUaUGg -5'
33163 3' -55.8 NC_007497.1 + 30245 0.7 0.378519
Target:  5'- aGUCGCGGagcgacaUGcCGGGCAGCGggAUGCUg -3'
miRNA:   3'- -UAGCGUCgg-----ACuGCCCGUCGU--UAUGG- -5'
33163 3' -55.8 NC_007497.1 + 10779 0.7 0.351962
Target:  5'- -cCGCGGCCgacaggGGCGcgcgcacgcuGGCAGCGAUggacGCCg -3'
miRNA:   3'- uaGCGUCGGa-----CUGC----------CCGUCGUUA----UGG- -5'
33163 3' -55.8 NC_007497.1 + 12302 0.7 0.343408
Target:  5'- cGUCGCGGCCgccGCcGGCGGCAAcGCg -3'
miRNA:   3'- -UAGCGUCGGac-UGcCCGUCGUUaUGg -5'
33163 3' -55.8 NC_007497.1 + 7692 0.66 0.607204
Target:  5'- aGUCGCAauuCCUGuucguuggcAUGGuGCGGCAGUACa -3'
miRNA:   3'- -UAGCGUc--GGAC---------UGCC-CGUCGUUAUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.