miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33163 5' -55.5 NC_007497.1 + 28765 0.66 0.647573
Target:  5'- ------aGUGACGccAGCCagGCCgGGCUGa -3'
miRNA:   3'- guuuaugCACUGC--UCGG--CGGgCCGAC- -5'
33163 5' -55.5 NC_007497.1 + 26055 0.66 0.636406
Target:  5'- uCGGAgGCGUGAuCGAGUCGaUCGGCUc -3'
miRNA:   3'- -GUUUaUGCACU-GCUCGGCgGGCCGAc -5'
33163 5' -55.5 NC_007497.1 + 12000 0.66 0.636406
Target:  5'- -uGAUGcCGUGACGAuuGCCGCgagCGGCg- -3'
miRNA:   3'- guUUAU-GCACUGCU--CGGCGg--GCCGac -5'
33163 5' -55.5 NC_007497.1 + 23459 0.67 0.591799
Target:  5'- ----aGCGaGcUGAGCCGUCCGGCg- -3'
miRNA:   3'- guuuaUGCaCuGCUCGGCGGGCCGac -5'
33163 5' -55.5 NC_007497.1 + 44003 0.67 0.591799
Target:  5'- ----gGCGUGAuCGAuGCCGCaUgGGCUGc -3'
miRNA:   3'- guuuaUGCACU-GCU-CGGCG-GgCCGAC- -5'
33163 5' -55.5 NC_007497.1 + 21176 0.67 0.558676
Target:  5'- ----gGCGgccGCGuGCUGCCCGGaCUGg -3'
miRNA:   3'- guuuaUGCac-UGCuCGGCGGGCC-GAC- -5'
33163 5' -55.5 NC_007497.1 + 40514 0.68 0.494257
Target:  5'- ----gGCGUGGCGuuuccGGCgguagCGCCCGGCUu -3'
miRNA:   3'- guuuaUGCACUGC-----UCG-----GCGGGCCGAc -5'
33163 5' -55.5 NC_007497.1 + 37581 0.68 0.494257
Target:  5'- -cAAUGCG-GACGGGaguaccacCUGCCCGGCg- -3'
miRNA:   3'- guUUAUGCaCUGCUC--------GGCGGGCCGac -5'
33163 5' -55.5 NC_007497.1 + 36161 0.69 0.463326
Target:  5'- gGAAgcggGCGgGGCGcgucGGCCGCCCGGUc- -3'
miRNA:   3'- gUUUa---UGCaCUGC----UCGGCGGGCCGac -5'
33163 5' -55.5 NC_007497.1 + 16200 0.69 0.463326
Target:  5'- uCGAAacCGUGugGGccGCCGCCgaGGCUGu -3'
miRNA:   3'- -GUUUauGCACugCU--CGGCGGg-CCGAC- -5'
33163 5' -55.5 NC_007497.1 + 42506 0.69 0.453242
Target:  5'- --cGUGCG-GACGAGCUuggGCCucCGGCUGc -3'
miRNA:   3'- guuUAUGCaCUGCUCGG---CGG--GCCGAC- -5'
33163 5' -55.5 NC_007497.1 + 42587 0.7 0.408466
Target:  5'- -----cCGUGGCGAGCCgugcuauuugcgcguGCCCGGUg- -3'
miRNA:   3'- guuuauGCACUGCUCGG---------------CGGGCCGac -5'
33163 5' -55.5 NC_007497.1 + 10276 0.72 0.318086
Target:  5'- ------gGUcGGCGGGCUGCCCGGCa- -3'
miRNA:   3'- guuuaugCA-CUGCUCGGCGGGCCGac -5'
33163 5' -55.5 NC_007497.1 + 30225 0.72 0.29497
Target:  5'- aCGAcaGCGUGAacuCGAccuGCaCGCCCGGCUGu -3'
miRNA:   3'- -GUUuaUGCACU---GCU---CG-GCGGGCCGAC- -5'
33163 5' -55.5 NC_007497.1 + 35267 1.07 0.000995
Target:  5'- gCAAAUACGUGACGAGCCGCCCGGCUGc -3'
miRNA:   3'- -GUUUAUGCACUGCUCGGCGGGCCGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.