Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33164 | 3' | -57.3 | NC_007497.1 | + | 35418 | 1.1 | 0.000359 |
Target: 5'- cUGCAGGCGAGUCAUCGCUUGCCCGACg -3' miRNA: 3'- -ACGUCCGCUCAGUAGCGAACGGGCUG- -5' |
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33164 | 3' | -57.3 | NC_007497.1 | + | 12242 | 0.73 | 0.17746 |
Target: 5'- cGCAGGUGGauacagcucGUCGUCGCUU-CUCGGCg -3' miRNA: 3'- aCGUCCGCU---------CAGUAGCGAAcGGGCUG- -5' |
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33164 | 3' | -57.3 | NC_007497.1 | + | 36164 | 0.72 | 0.214539 |
Target: 5'- aGCGGGCGGGgcgCGUCGgccGCCCGGu -3' miRNA: 3'- aCGUCCGCUCa--GUAGCgaaCGGGCUg -5' |
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33164 | 3' | -57.3 | NC_007497.1 | + | 27610 | 0.72 | 0.226292 |
Target: 5'- uUGCAGGCGA---AUCGCg-GCUCGACg -3' miRNA: 3'- -ACGUCCGCUcagUAGCGaaCGGGCUG- -5' |
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33164 | 3' | -57.3 | NC_007497.1 | + | 19890 | 0.69 | 0.357568 |
Target: 5'- aUGCAGGgaCGGGUCAUCGagucagGCCaGACc -3' miRNA: 3'- -ACGUCC--GCUCAGUAGCgaa---CGGgCUG- -5' |
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33164 | 3' | -57.3 | NC_007497.1 | + | 14564 | 0.68 | 0.38404 |
Target: 5'- gUGCAGGuCGAguucacgcuGUCGUCGCc-GCUCGAUu -3' miRNA: 3'- -ACGUCC-GCU---------CAGUAGCGaaCGGGCUG- -5' |
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33164 | 3' | -57.3 | NC_007497.1 | + | 15314 | 0.68 | 0.393149 |
Target: 5'- aGCGGGgGA-UCA-CGC-UGCCCGAUu -3' miRNA: 3'- aCGUCCgCUcAGUaGCGaACGGGCUG- -5' |
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33164 | 3' | -57.3 | NC_007497.1 | + | 3853 | 0.68 | 0.393149 |
Target: 5'- uUGC-GGCGucggcagccucGGUCAUCGCgaUGgCCGGCg -3' miRNA: 3'- -ACGuCCGC-----------UCAGUAGCGa-ACgGGCUG- -5' |
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33164 | 3' | -57.3 | NC_007497.1 | + | 34581 | 0.68 | 0.393149 |
Target: 5'- cGCGGGCG-GcCGcCGUUUGCgCGACc -3' miRNA: 3'- aCGUCCGCuCaGUaGCGAACGgGCUG- -5' |
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33164 | 3' | -57.3 | NC_007497.1 | + | 3893 | 0.68 | 0.406134 |
Target: 5'- cGCGGucgucaucuucggucGCGAGUCGUCGUgcacgcgUGCCguccCGACg -3' miRNA: 3'- aCGUC---------------CGCUCAGUAGCGa------ACGG----GCUG- -5' |
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33164 | 3' | -57.3 | NC_007497.1 | + | 10391 | 0.68 | 0.411781 |
Target: 5'- aUGCAGGCGccgcucgaucaGGUCAUCGacaaauaCCGGCa -3' miRNA: 3'- -ACGUCCGC-----------UCAGUAGCgaacg--GGCUG- -5' |
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33164 | 3' | -57.3 | NC_007497.1 | + | 35366 | 0.67 | 0.43095 |
Target: 5'- cGCuGGCGccGGUCGcuUCGUUcGCUCGACc -3' miRNA: 3'- aCGuCCGC--UCAGU--AGCGAaCGGGCUG- -5' |
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33164 | 3' | -57.3 | NC_007497.1 | + | 3758 | 0.67 | 0.460656 |
Target: 5'- cUGCAuGCGAGUCuUUGC--GUCCGGCu -3' miRNA: 3'- -ACGUcCGCUCAGuAGCGaaCGGGCUG- -5' |
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33164 | 3' | -57.3 | NC_007497.1 | + | 32411 | 0.66 | 0.491411 |
Target: 5'- aUGCAGG-GAuacuGUCGcUCGUcgacgUGCCCGGCc -3' miRNA: 3'- -ACGUCCgCU----CAGU-AGCGa----ACGGGCUG- -5' |
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33164 | 3' | -57.3 | NC_007497.1 | + | 17533 | 0.66 | 0.501874 |
Target: 5'- cGCAGGCGcAGgcaCAUCGCgucgGCCaaugGAUu -3' miRNA: 3'- aCGUCCGC-UCa--GUAGCGaa--CGGg---CUG- -5' |
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33164 | 3' | -57.3 | NC_007497.1 | + | 5930 | 0.66 | 0.511373 |
Target: 5'- cGCGGGUgucGAGgaugaCGUCGUgcagaugUUGCUCGACg -3' miRNA: 3'- aCGUCCG---CUCa----GUAGCG-------AACGGGCUG- -5' |
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33164 | 3' | -57.3 | NC_007497.1 | + | 18801 | 0.66 | 0.523083 |
Target: 5'- aUGCcGGCGuGUgGUCGCU-GCaguCGGCg -3' miRNA: 3'- -ACGuCCGCuCAgUAGCGAaCGg--GCUG- -5' |
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33164 | 3' | -57.3 | NC_007497.1 | + | 37163 | 0.66 | 0.533817 |
Target: 5'- cGCaucGGGCGGGUCAUCGagggGgCUGAg -3' miRNA: 3'- aCG---UCCGCUCAGUAGCgaa-CgGGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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