Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33164 | 5' | -52 | NC_007497.1 | + | 1244 | 0.68 | 0.7079 |
Target: 5'- -cGCCGuACuGCuGCGUCGaGUACgccAGCg -3' miRNA: 3'- aaCGGCuUGuUG-CGCAGC-CAUGa--UCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 30125 | 0.68 | 0.7079 |
Target: 5'- -cGCgGAGCAugGCGUCGGcgAUccgaUAGg -3' miRNA: 3'- aaCGgCUUGUugCGCAGCCa-UG----AUCg -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 18760 | 0.68 | 0.685299 |
Target: 5'- -gGCCG-GCGACGCGgaaGaGUACgcgGGCg -3' miRNA: 3'- aaCGGCuUGUUGCGCag-C-CAUGa--UCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 8350 | 0.69 | 0.673909 |
Target: 5'- cUUGCCGAGCuGCGCGcgcagaugUCGGcUGCcgAGUu -3' miRNA: 3'- -AACGGCUUGuUGCGC--------AGCC-AUGa-UCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 40127 | 0.69 | 0.673909 |
Target: 5'- cUGCCGuAACgGACGCGcUCGGUcgacAC-AGCg -3' miRNA: 3'- aACGGC-UUG-UUGCGC-AGCCA----UGaUCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 20699 | 0.69 | 0.662477 |
Target: 5'- -cGCCgcGAACAGCGCGagUCGGaUAUgcGCa -3' miRNA: 3'- aaCGG--CUUGUUGCGC--AGCC-AUGauCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 21613 | 0.69 | 0.651013 |
Target: 5'- -gGCCGcguuGACgAGCGCG-CGGgagaGCUGGCg -3' miRNA: 3'- aaCGGC----UUG-UUGCGCaGCCa---UGAUCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 12525 | 0.69 | 0.651013 |
Target: 5'- cUUGuuGGcgGCAGCgGUGcUGGUGCUGGCg -3' miRNA: 3'- -AACggCU--UGUUG-CGCaGCCAUGAUCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 10957 | 0.69 | 0.63953 |
Target: 5'- -cGCCcAGCAACGCG-CGGaaUACaGGCg -3' miRNA: 3'- aaCGGcUUGUUGCGCaGCC--AUGaUCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 14073 | 0.69 | 0.63953 |
Target: 5'- -aGCUG-ACAGCGCGUCGuGUcGC-GGCg -3' miRNA: 3'- aaCGGCuUGUUGCGCAGC-CA-UGaUCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 1968 | 0.69 | 0.63953 |
Target: 5'- -cGCCGcaucGCGGCgGCGUCGGgGC-AGCg -3' miRNA: 3'- aaCGGCu---UGUUG-CGCAGCCaUGaUCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 12314 | 0.69 | 0.63953 |
Target: 5'- -cGCCGGcgGCAACGCGUaCGGguuccauCUuGCg -3' miRNA: 3'- aaCGGCU--UGUUGCGCA-GCCau-----GAuCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 27038 | 0.69 | 0.63953 |
Target: 5'- -cGCCGAAUu-CGCGcuucccaacgauUCGGUACU-GCa -3' miRNA: 3'- aaCGGCUUGuuGCGC------------AGCCAUGAuCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 16067 | 0.69 | 0.63953 |
Target: 5'- aUGCgCGAAUGGCGCGggCGcGU-CUGGCu -3' miRNA: 3'- aACG-GCUUGUUGCGCa-GC-CAuGAUCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 40221 | 0.7 | 0.559551 |
Target: 5'- cUUGUCGAccuucgcCAACGCGUCGG-ACgucGGCa -3' miRNA: 3'- -AACGGCUu------GUUGCGCAGCCaUGa--UCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 35572 | 0.71 | 0.537129 |
Target: 5'- aUGCCGcgcGCGAuCGCGUCGGccACgccgGGCa -3' miRNA: 3'- aACGGCu--UGUU-GCGCAGCCa-UGa---UCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 40720 | 0.71 | 0.526033 |
Target: 5'- -cGCgCGAGCucauCGCGgCGGUACgcgAGCg -3' miRNA: 3'- aaCG-GCUUGuu--GCGCaGCCAUGa--UCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 42008 | 0.73 | 0.440963 |
Target: 5'- -gGCCGAACcggAACGC-UCGG-GCUGGCc -3' miRNA: 3'- aaCGGCUUG---UUGCGcAGCCaUGAUCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 7177 | 0.81 | 0.140844 |
Target: 5'- -aGCCGAGCAACGCGaagaUCaGGUGCgccgGGCa -3' miRNA: 3'- aaCGGCUUGUUGCGC----AG-CCAUGa---UCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 35457 | 1.1 | 0.001236 |
Target: 5'- cUUGCCGAACAACGCGUCGGUACUAGCg -3' miRNA: 3'- -AACGGCUUGUUGCGCAGCCAUGAUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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